Genome sc|0000778

Genomics

Accession

NCBI Assembly:GCA_006954405

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 97.18%
• Contamination: 0.0%
• Quality: 97.18

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

17.0 ×

Source

• BioSample: SAMN04576377
• BioSample: SAMN04577619

Other features

• G+C Content: 47.64%
• Coding Density: 91.51%
• Codon Table: 11
• N50: 1,061,598 bp
• Contigs: 2
• Largest Contig: 1,061,598 bp
• Assembly Length: 1,416,890 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2009-08-27

Location

Lat Lon: 51.53 N 8.28 W

Toponym

Geo Loc Name: Ireland: Cork

Environment

Sample Type: metagenomic assembly

Isolation Source: stool sample

Other

Host: Homo sapiens

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN04576377: Microbe sample from Candidatus Methanarcanum hacksteinii
• SAMN04577619: Metagenome or environmental sample from human gut metagenome

---

Metadata retrieved 9 months ago