Genome sc|0000779

Name

“Methanoprimaticola hominis”

Database

NCBI Assembly

Accession

GCA_006954465

Genomics

Accession

NCBI Assembly:GCA_006954465

Cultures

Strain sc|0038606

Type

Enrichment Genome

Estimated Quality Metrics

Completeness: 96.1%
Contamination: 0.81%
Quality: 92.05

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 18 amino acids

Sequencing depth

25.0 ×

Source

Other features

G+C Content: 58.7%
Coding Density: 88.51%
Codon Table: 11
N50: 6,116 bp
Contigs: 271
Largest Contig: 22,072 bp
Assembly Length: 1,492,097 bp
Ambiguous Assembly Fraction: 0.25%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs.

Automated checks

Complete

Last modified 12 days ago

Sample Metadata

BioSample entries

Date

Collection Date: 2011-01-31

Location

Lat Lon: 51.53 N 8.28 W

Toponym

Geo Loc Name: Ireland: Cork

Environment

Sample Type: metagenomic assembly

Isolation Source: stool sample

Other

Host: Homo sapiens

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

Metadata retrieved about 1 year ago (queued for update about 14 hours ago)

© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license