Genome sc|0000779

Genomics

Accession

NCBI Assembly:GCA_006954465

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 96.1%
• Contamination: 0.81%
• Quality: 92.05

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

25.0 ×

Source

• BioSample: SAMN04576382
• BioSample: SAMN04577624

Other features

• G+C Content: 58.7%
• Coding Density: 88.51%
• Codon Table: 11
• N50: 6,116 bp
• Contigs: 271
• Largest Contig: 22,072 bp
• Assembly Length: 1,492,097 bp
• Ambiguous Assembly Fraction: 0.25%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2011-01-31

Location

Lat Lon: 51.53 N 8.28 W

Toponym

Geo Loc Name: Ireland: Cork

Environment

Sample Type: metagenomic assembly

Isolation Source: stool sample

Other

Host: Homo sapiens

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN04576382: Microbe sample from Methanomassiliicoccales archaeon Mx-06
• SAMN04577624: Metagenome or environmental sample from human gut metagenome

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Metadata retrieved 9 months ago