Genome sc|0000792

Genomics

Accession

NCBI Assembly:GCA_028278675.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.2%
• Contamination: 0.9%
• Quality: 92.7

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

13.0 ×

Source

• BioSample: SAMN18721850
• BioSample: SAMN11333419
• BioSample: SAMN52587486

Other features

• G+C Content: 63.98%
• Coding Density: 89.58%
• Codon Table: 11
• N50: 53,974 bp
• Contigs: 104
• Largest Contig: 225,468 bp
• Assembly Length: 3,767,021 bp
• Ambiguous Assembly Fraction: 0.23%

Automated checks

Complete

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Last modified 3 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN18721850
• BioSample: SAMN11333419
• BioSample: SAMN52587486

Date

Collection Date: 2014-01

Location

Lat Lon: 33° 0′ 36″ N, 35° 2′ 24″ E

View map of sampling locations

Toponym

Geo Loc Name: Israel:Achziv Nature Marine Reserve

Environment

Sample Type: metagenomic assembly

Isolation Source: coastal seawater

Env Broad Scale: rocky shore

Env Local Scale: coastal water

Env Medium: sea water

Other

Host: Petrosia ficiformis

Depth: 27.3 m

Package

Ncbi Package: Metagenome.environmental.1.0

Ncbi Submission Package: MIMAG.host-associated.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.host-associated • Metagenome or environmental

All retrieved samples

• SAMN18721850: MIMAG Metagenome-assembled Genome sample from Candidatus Azophilus lithoversatilis
• SAMN11333419: Metagenome or environmental sample from sponge metagenome
• SAMN52587486: sponge metagenome

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Metadata retrieved 3 months ago