Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN30287284, ERS16752037

collection_date

2014-06

number_of_host_metagenomes

3

organism

Gammaproteobacteria bacterium

isolation-source

sponge tissue, low temperature, low CO2

env_broad_scale

coral reef [ENVO:00000150]

metagenomic

1

derived-from

SAMN13227204, SAMN13227205, SAMN13227206

environmental-sample

1

env_local_scale

coral reef [ENVO:00000150]

metagenome-source

sponge metagenome

isolate

r_call15

NCBI submission package

MIMAG.host-associated.6.0

experimental_conditions

low temperature, low CO2

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

env_medium

sponge

lat_lon

18.816 S 147.633 E

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2022-08-12

ENA-LAST-UPDATE

2023-09-03

BioSample Accession(s)

SAMN13227204, SRS5616649

collection_date

2014-06

INSDC secondary accession

SRS5616649

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_400_rep1

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

BioSample Accession(s)

SAMN13227205, SRS5616650

collection_date

2014-06

INSDC secondary accession

SRS5616650

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_400_rep2

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

BioSample Accession(s)

SAMN13227206, SRS5616651

collection_date

2014-06

INSDC secondary accession

SRS5616651

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_400_rep3

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105459" alias="CA15" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105459</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA15</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616649">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616649</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_15</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA15</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616649</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105459&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105459&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105460" alias="CA14" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105460</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA14</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616650">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616650</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_14</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA14</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616650</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105460&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105460&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105461" alias="CA13" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105461</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA13</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616651">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616651</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_13</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA13</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616651</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105461&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105461&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>