JSON

Genome sc|0000794

Name

Spongiifermentum lactensTs

Database

NCBI Assembly

Accession

GCA_028289815.1

Genomics

Accession
NCBI Assembly:GCA_028289815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.95%
  • Contamination: 0.59%
  • Quality: 88.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 71.0%)
  • tRNAs for 20 amino acids
Sequencing depth
15.0 ×
Source
Other features
  • G+C Content: 48.82%
  • Coding Density: 86.84%
  • Codon Table: 11
  • N50: 32,420 bp
  • Contigs: 89
  • Largest Contig: 120,012 bp
  • Assembly Length: 2,179,184 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-06
Location
Lat Lon: 18° 48′ 58″ S, 147° 37′ 59″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge tissue, low temperature, low CO2 • sponge tissue
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Phyllospongia foliascens
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples
Metadata retrieved 3 months ago


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