SeqCode Registry
cognitis nomina
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Genomes
sc|0000810
JSON
Genome sc|0000810
Database
INSDC Nucleotide
Accession
SAMEA5501860
Genomics
Accession
INSDC Nucleotide:
SAMEA5501860
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.95%
Contamination:
2.46%
Quality:
80.65
Source
BioSample: SAMN37643305
Automated checks
Failed: Cannot find ncbi:nuccore:SAMEA5501860
Sample Metadata
Date
Collection Date:
2019-06-05
Location
Lat Lon:
40.4637 N 3.7492 W
Toponym
Geo Loc Name:
Spain
Environment
Sample Type:
metagenomic assembly
Isolation Source:
feces
Other
Host:
Homo sapiens
Package
Ncbi Package:
MIMAG.6.0
Additional Accessions
SRR5558136
Append as BioSamples
All retrieved samples
SAMN37643305
: MIMAG Metagenome-assembled Genome sample from Ruminococcus sp.
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37643305
×
Human metagenome from faecesKeywords: GSC:MIxS;MIMAG:6.0
host
Homo sapiens
isolation_source
feces
isolate
MAG-GUT74815
collection_date
2019-06-05
geo_loc_name
Spain
lat_lon
40.4637 N 3.7492 W
corresponding ENA BioSample
SAMEA5501860
metagenomic
1
environmental-sample
1
sample_type
metagenomic assembly
metagenome_source
human gut metagenome
env_broad_scale
missing
env_local_scale
missing
env_medium
missing
derived_from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR5558136
ncbi_package
MIMAG.6.0
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