Genome sc|0000813

Genomics

Accession

NCBI Assembly:GCA_015278155.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.9%
• Quality: 95.5

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 67.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

876.0 ×

Source

• BioSample: SAMN16593887

Other features

• G+C Content: 41.0%
• Coding Density: 89.8%
• Codon Table: 11
• N50: 409,614 bp
• Contigs: 61
• Largest Contig: 904,588 bp
• Assembly Length: 4,501,926 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

DNA was used for 300-bp paired-end library preparation with Nextera XT DNA Sample Preparation Kit. The genome sequences were obtained by using MiSeq sequencer (Illumina). Sequences obtained were pre-processed using Prinseq software (v.0.20.4) to remove reads smaller than 35 bp and low-score sequences (Phred 30). Sequence reads were assembled using A5-Miseq software (v.20160825). The software CheckM was used to check for completeness and contamination. Gene prediction and functional annotation were performed using the Rapid Annotation using Subsystem Technology (RAST) program. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2016-09-10

Location

Lat Lon: 22.58 S 42.02 W

Toponym

Geo Loc Name: Brazil: Rio de Janeiro, Arraial do Cabo

Environment

Sample Type: cell culture

Isolation Source: skin

Env Broad Scale: ocean

Env Local Scale: ocean

Env Medium: ocean

Other

Host: Sphoeroides spengleri

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

• SAMN16593887: Microbe sample from Pseudoalteromonas sp. A520

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Metadata retrieved 9 months ago