Genome sc|0000082


Database

NCBI Assembly

Accession

GCA_003568775.1

Genomics

Accession
NCBI Assembly:GCA_003568775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
86.68 ×
Source
Other features
  • G+C Content: 32.2%
  • Coding Density: 93.52%
  • Codon Table: 11
  • N50: 111,948 bp
  • Contigs: 9
  • Largest Contig: 193,791 bp
  • Assembly Length: 575,637 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The Prokaryotic Genome Annotation Pipeline (PGAP) was used to identify tRNA and rRNA genes. Completion and contamination were estimated by CheckM. Although analysis with CheckM suggested low completeness, this was likely due to the reduced genome size typical of Nanoarchaeota. The program identified 120-121 archaeal marker genes, which is very similar to the number of marker genes (118-119) identified in the complete genomes of two other Nanoarchaeota, Cand. Nanopusillus acidilobi and Nanoarchaeum equitans (see St. John et al., 2019). For this reason, completion is estimated at 100%.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015-04
Location
Lat Lon: 38.0654 S 176.3595 E
Toponym
Geo Loc Name: New Zealand: Tikitere, geothermal spring
Environment
Env Material: water and sediment
Sample Type: metagenomic assembly
Env Biome: geothermal spring
Isolation Source: 5 single cells from different organisms amplified by MDA; water and sediment from hot spring
Other
Host: Desulfurococcales
Ph: 6.48
Depth: 5
Temp: 78.5 C
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.sediment.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved 5 months ago


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