JSON

Genome sc|0000821

Name

“Pseudorubrivivax bioreactoricola”

Database

NCBI Assembly

Accession

GCA_020852865.1

Genomics

Accession
NCBI Assembly:GCA_020852865.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.3%
  • Contamination: 0.9%
  • Quality: 90.8
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
61.0 ×
Source
Other features
  • G+C Content: 72.41%
  • Coding Density: 91.33%
  • Codon Table: 11
  • N50: 79,539 bp
  • Contigs: 102
  • Largest Contig: 254,062 bp
  • Assembly Length: 4,190,849 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2015-11-11
Location
Lat Lon: 55.633 N 13.042 E
Toponym
Geo Loc Name: Sweden: Sjolunda WWTP
Environment
Sample Type: metagenomic assembly
Isolation Source: Partial nitritation anammox bioreactor
Env Broad Scale: waste water treatment plant
Env Local Scale: biofilm [ENVO_00002034]
Env Medium: waste water [ENVO:00002001]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.5.0
Biosamplemodel: MIMAG.wastewater
Additional Accessions
SAMN14350132, SAMN14350134, SAMN14350135, SAMN14350144, SAMN14350146, SAMN14350147, SAMN14350154, SAMN14350155, SAMN14350160, SAMN14350166, SAMN14350167, SAMN14350168, SAMN14350177, SAMN14350178, SAMN14350179, SAMN14350189, SAMN14350190 and SAMN14350191
All retrieved samples
Metadata retrieved 10 months ago


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