JSON

Genome sc|0000836

Name

“Metarubrivivax bioreactoricola”

Database

NCBI Assembly

Accession

GCA_020845645.1

Genomics

Accession
NCBI Assembly:GCA_020845645.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
71.0 ×
Source
Other features
  • G+C Content: 71.37%
  • Coding Density: 92.49%
  • Codon Table: 11
  • N50: 36,736 bp
  • Contigs: 242
  • Largest Contig: 121,379 bp
  • Assembly Length: 5,225,946 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015-11-11
Location
Lat Lon: 55.633 N 13.042 E
Toponym
Geo Loc Name: Sweden: Sjolunda WWTP
Environment
Sample Type: metagenomic assembly
Isolation Source: Partial nitritation anammox bioreactor
Env Broad Scale: waste water treatment plant
Env Local Scale: biofilm [ENVO_00002034]
Env Medium: waste water [ENVO:00002001]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.5.0
Biosamplemodel: MIMAG.wastewater
Additional Accessions
SAMN14350132, SAMN14350134, SAMN14350135, SAMN14350144, SAMN14350146, SAMN14350147, SAMN14350154, SAMN14350155, SAMN14350160, SAMN14350166, SAMN14350167, SAMN14350168, SAMN14350177, SAMN14350178, SAMN14350179, SAMN14350189, SAMN14350190 and SAMN14350191
All retrieved samples
Metadata retrieved 8 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license