JSON

Genome sc|0000085

Name

Hestiella acidicharensTs

Database

NCBI Assembly

Accession

GCA_035161305.1

Genomics

Accession
NCBI Assembly:GCA_035161305.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.42%
  • Contamination: 0.03%
  • Quality: 96.27
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
22.43 ×
Source
Other features
  • G+C Content: 40.2%
  • Coding Density: 86.11%
  • Codon Table: 11
  • N50: 33,173 bp
  • Contigs: 78
  • Largest Contig: 150,908 bp
  • Assembly Length: 1,392,174 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome completeness and contamination were estimated using CheckM2. Ribosomal RNAs and tRNAs were identified via the Prokaryotic Genome Annotation Pipeline (PGAP). 
Automated checks
Complete
Last modified 11 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005-04-22
Location
Lat Lon: 22.1802 S 176.6008 W
Toponym
Geo Loc Name: Pacific Ocean: Lau Basin
Environment
Isolation Source: hydrothermal sulfide rock
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 11 days ago

Sequencing Experiments

SRR7968105


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license