JSON

Genome sc|0000087

Name

Not registered

Database

NCBI Assembly

Accession

GCA_003056265.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_003056265.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.5% (automated estimate: 96.2%)
  • Contamination: 0.63% (automated estimate: 0.0%)
  • Quality: 94.35 (automated estimate: 96.2)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 2)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 2)
  • tRNAs for 19 amino acids (automated estimate: 20)
Sequencing depth
411.0 ×
Source
Other features
  • G+C Content: 41.5% (automated estimate: 41.93%)
  • Coding Density: 87.18%
  • Codon Table: 11
  • N50: 454,821 bp
  • Contigs: 19
  • Largest Contig: 644,031 bp
  • Assembly Length: 1,808,184 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Transfer RNAs were detected with the Prokaryotic Genome Annotation Pipeline (PGAP). Rfam v.12.0 was used to identify rRNA genes. Due to the presence of intervening sequences, the 16S rRNA gene is longer in length than is typical and was not identified by PGAP. CheckM v.1.0.7 was used to estimate contamination and completion. 
Automated checks
Complete
Edit genome data
Last modified about 1 year ago


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