SeqCode Registry
cognitis nomina
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Genomes
sc|0000963
JSON
Genome sc|0000963
Database
NCBI Assembly
Accession
VBAL00000000
Genomics
Accession
NCBI Assembly:
VBAL00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
81.79%
(automated estimate: 86.8%)
Contamination:
3.55%
(automated estimate: 1.9%)
Quality:
64.04
(automated estimate: 77.3)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 22.8%)
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 32 amino acids
(automated estimate: 19)
Sequencing depth
7.0 ×
Source
BioSample: SAMN11380291
Other features
G+C Content:
64.76%
(automated estimate: 64.43%)
Coding Density:
89.81%
Codon Table:
11
N50:
17,989 bp
Contigs:
325
Largest Contig:
89,534 bp
Assembly Length:
2,943,780 bp
Ambiguous Assembly Fraction:
0.5%
Automated checks
Complete
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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