JSON

Genome sc|0000979

Name

Not registered

Database

INSDC Nucleotide

Accession

LDXQ00000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:LDXQ00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 84.41% (automated estimate: 90.6%)
  • Contamination: 2.04% (automated estimate: 1.9%)
  • Quality: 74.21 (automated estimate: 81.1)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
34.0 ×
Source
Other features
  • G+C Content: 68.26% (automated estimate: 68.24%)
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 28,046 bp
  • Contigs: 154
  • Largest Contig: 108,837 bp
  • Assembly Length: 2,535,673 bp
  • Ambiguous Assembly Fraction: 0.021%
Automated checks
Complete
Edit genome data
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-07-20
Location
Lat Lon: 39.53 N 107.78 W
Toponym
Geo Loc Name: USA: Rifle, Colorado
Environment
Isolation Source: sediment at 5m depth
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 9 months ago


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