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cognitis nomina
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Genomes
sc|0000983
JSON
Genome sc|0000983
Name
“Segetimicrobium genomatis”
Database
INSDC Nucleotide
Accession
VBAK00000000
Genomics
Accession
INSDC Nucleotide:
VBAK00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.6%
Contamination:
4.2%
Quality:
72.6
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 21 amino acids
Sequencing depth
22.0 ×
Source
BioSample: SAMN11380290
BioSample: SAMN08902864
Other features
G+C Content:
68.94%
Coding Density:
91.37%
Codon Table:
11
N50:
35,544 bp
Contigs:
200
Largest Contig:
127,315 bp
Assembly Length:
3,702,252 bp
Ambiguous Assembly Fraction:
0.00068%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2014-09-03
Location
Lat Lon:
39.74 N 123.63 W
Toponym
Geo Loc Name:
USA: Angelo Coast Range Reserve, CA
Environment
Env Material:
soil
Sample Type:
metagenomic assembly
Env Biome:
temperate grassland biome
Isolation Source:
temperate grassland biome • Plot 12
Other
Depth:
10-20 cm
Package
Ncbi Submission Package:
Microbe.1.0
•
MIMS.me.soil.5.0
Biosamplemodel:
Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil
All retrieved samples
SAMN11380290
: Microbe sample from Terrabacteria group bacterium ANGP1
SAMN08902864
: MIMS Environmental/Metagenome sample from soil metagenome
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN11380290
×
collection_date
2014-09-03
isolate
NP_3
note
This BioSample is a metagenomic assembly obtained from the soil metagenome BioSample: SAMN08902864
NCBI submission package
Microbe.1.0
organism
Terrabacteria group bacterium ANGP1
metagenomic
1
geo_loc_name
USA: Angelo Coast Range Reserve, CA
lat_lon
39.74 N 123.63 W
sample_type
metagenomic assembly
environmental-sample
1
isolation_source
temperate grassland biome
metagenome-source
soil metagenome
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-04-15
ENA-LAST-UPDATE
2019-05-14
SAMN08902864
×
Keywords: GSC:MIxS;MIMS:5.0
collection_date
2014-09-03
env_feature
meadow soil
INSDC secondary accession
SRS3199735
NCBI submission package
MIMS.me.soil.5.0
depth
10-20 cm
env_material
soil
organism
soil metagenome
elev
1417 ft
geo_loc_name
USA: Angelo Coast Range Reserve, CA
env_biome
temperate grassland biome
lat_lon
39.74 N 123.63 W
isolation_source
Plot 12
BioSampleModel
MIGS/MIMS/MIMARKS.soil
ENA-FIRST-PUBLIC
2018-06-12
ENA-LAST-UPDATE
2021-02-28
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