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“Micrarchaeum acidiphilum”

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Citation

Formal styling
“Micrarchaeum acidiphilum” Baker et al., 2010
Effective publication
Baker et al., 2010
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:135

Nomenclature

Rank
Species
Syllabication
a.ci.di'phi.lum
Etymology
L. masc. adj. acidus, sour, acid; Gr. masc. adj. philos, loving; N.L. neut. adj. acidiphilum, acid-loving
Nomenclatural type
NCBI Assembly: GCA_009387755.1

Taxonomy

Description
The type material is the metagenome assembled genome ARMAN-2 (ACVJ00000000) recovered from from samples collected at Richmond Mine, Iron Mountain in northern California in 2005. The MAG consists of 1 Mbp in 8 contigs with an estimated completeness of 96.6% and 0.5% contamination, two 16S, one 23S, and one 5S genes, and 20 unique tRNAs. The GC content of this MAG is 47.27%. The organism is an acidophile.
Classification
Archaea » “Micrarchaeota” » “Micrarchaeia” » “Micrarchaeales” » “Micrarchaeaceae” » “Micrarchaeum” » “Micrarchaeum acidiphilum”
Parent
“Micrarchaeum” gtdb

Genomics

Accession
NCBI Assembly:GCA_009387755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.3%
  • Contamination: 0.0%
  • Quality: 92.3
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 66.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 47.27%
  • Coding Density: 91.07%
  • Codon Table: 11
  • N50: 322,920 bp
  • Contigs: 8
  • Largest Contig: 335,072 bp
  • Assembly Length: 1,010,785 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 5 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 6 years ago and claimed 5 months ago by Vázquez-Campos, Xabier

Publications
3

Citation Title
Hirata, 2025, Worldwide Protein Data Bank Structural basis of substrate promiscuity in the archaeal RNA-splicing endonuclease from Candidatus Micrarchaeum acidiphilum (ARMAN-2)
Hirata et al., 2012, Worldwide Protein Data Bank Crystal structure of the fourth type of archaeal tRNA splicing endonuclease from Candidatus Micrarchaeum acidiphilum ARMAN-2
Baker et al., 2010, Proceedings of the National Academy of Sciences Enigmatic, ultrasmall, uncultivated Archaea
Effective publication


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