Abzuiibacterium crystallinumTs


Citation

Formal styling
Abzuiibacterium crystallinumTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23672

Nomenclature

Rank
Species
Syllabication
crys.tal.li'num
Etymology
L. neut. adj. crystallinum, crystalline, referring to Crystal Geyser where organism was detected
Nomenclatural type
NCBI Assembly: GCA_002787155.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Abzuiibacterium. Two unique assemblies are available for the species and range in estimated genome size between 2.4 and 2.6 Mb, with a %GC content of 45.25-45.27 %. Respiratory pathways, including genes associated with respiratory complexes I through V, are present in this species. This species is likely able to respire aerobically, as a cytochrome bd ubiquinol oxidase is encoded by genomes of this species. Predicted alternative electron acceptors include nitrite, and nitric oxide, while metal-reducing cytochromes and a conductive pilin are also encoded by genomes of this species. Additionally, a reversible acetyl-CoA synthetase is also encoded by the genomes, and may be indicative of acetate utilization by this species. A complete set of the genes for the production of a Type 4a-pilus is encoded by genomes of this species. Genomes of this species also encode the "symbiotic" F-type ATPase, an ADP/ATP translocase, and a very large ORF. The genomes originated from metagenomic samples from Crystal Geyser, Utah, USA, with samples taken at a reported temperature of 17.4 °C. The nomenclatural type of the species is the genome GCA_002787155.1.
Classification
Bacteria » Omnitrophota » Omnitrophia » Omnitrophales » Abzuiibacteriaceae » Abzuiibacterium » Abzuiibacterium crystallinumTs
Parent
Abzuiibacterium gtdb

Genomics

Accession
NCBI Assembly:GCA_002787155.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.35%
  • Contamination: 1.37%
  • Quality: 89.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 45.25%
  • Coding Density: 92.67%
  • Codon Table: 11
  • N50: 69,843 bp
  • Contigs: 76
  • Largest Contig: 147,707 bp
  • Assembly Length: 2,477,334 bp
  • Ambiguous Assembly Fraction: 0.083%
Submitter comments
Completeness and contamination estimates were determined with CheckM v.2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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