Zapsychrus unditaenarius


Citation

Formal styling
Zapsychrus unditaenarius Seymour et al., 2023 (valid 2025)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:-x-tioq9 (validated)
Canonical URL
https://seqco.de/i:23775

Nomenclature

Rank
Species
Syllabication
un.di.tae.na.ri'us
Etymology
L. fem. n. unda, water; L. masc. adj. taenarius, below ground; N.L. masc. adj. unditaenarius, water from below ground
Nomenclatural type
NCBI Assembly: GCA_001805965.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species conservatively belongs to the genus Zapsychrus. Low AAI values, typically associated with family-level relationships are observed between this taxon and the nomenclatural type for the genus, however, relative evolutionary divergence based on a phylogenomic tree inferred from the condensed Bac120 marker set indicate likely genus-level relationships. In addition to characteristics provided for the genus, predicted genome sizes range between 2.2-2.7 Mb with %GC between 37.12 and 37.60%. Some genes associated with acetogenesis and an Rnf complex are encoded by the genome. A reversible acetyl-CoA synthetase coupled with a cytoplasmic Group A3 [FeFe] hydrogenase encoded by this species may facilitate acetogenesis. A respiratory F-type ATPase, and a conductive pilin are encoded by genomes of this species. All genes associated with the tight-adherence complex formation and Type-4a pilus production are present in the genomes. Additionally, a "symbiotic" F-type ATPase and very large ORF are present in the genomes. Assemblies for this species originated from soil and groundwater samples from Rifle, Colorado, USA, where a pH of 7.67 was reported for some samples. The nomenclatural type for the species is the genome GCA_001805965.1.
Classification
Bacteria » Omnitrophota » Velaminicoccia » Zapsychrales » Zapsychraceae » Zapsychrus » Zapsychrus unditaenarius
Parent
Zapsychrus

Genomics

Accession
NCBI Assembly:GCA_001805965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.63%
  • Contamination: 0.23%
  • Quality: 91.48
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 37.47%
  • Coding Density: 92.35%
  • Codon Table: 11
  • N50: 55,792 bp
  • Contigs: 78
  • Largest Contig: 185,182 bp
  • Assembly Length: 2,677,152 bp
  • Ambiguous Assembly Fraction: 0.019%
Submitter comments
Completeness and contamination estimates calculated with CheckM v. 2.
Automated checks
Complete
See additional details

Last modified 7 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike, created over 2 years ago
Submitted by
Palmer, Marike 2 months ago
Curators
Validated by
St. John, Emily 7 days ago
Date of priority
2025-01-24 11:23 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license