Panguiarchaeum symbiosum^Ts

Citation

Formal styling

Panguiarchaeum symbiosum^Ts Qu et al., 2023

Effective publication

Qu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:d51mzlo9 (validated)

Canonical URL

https://seqco.de/i:23983

Nomenclature

Rank

Species

Syllabication

sym.bi.o'sum

Etymology

Gr. masc. or fem. adj. symbios, companion; N.L. neut. adj. symbiosum, living together with, referring to the proposed symbiotic lifestyle

Nomenclatural type

NCBI Assembly: GCA_024720975.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Archaea that inhabit circumneutral, terrestrial geothermal systems and are likely hyperthermophiles. Genomes of this species lack annotated pathways for synthesis of membrane lipids, many amino acids, vitamins, and purines, suggesting they are likely to be symbiotic. Predicted to be obligately anaerobic and fermentative. 

Classification

Archaea » “Korarchaeota” » “Korarchaeia” » Panguiarchaeales » Panguiarchaeaceae » Panguiarchaeum » Panguiarchaeum symbiosum^Ts

Parent

Panguiarchaeum gtdb

Genomics

Accession

NCBI Assembly:GCA_024720975.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.2%
• Contamination: 0.0%
• Quality: 96.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

17.0 ×

Source

• SRA: SRR21619498

Other features

• G+C Content: 40.21%
• Coding Density: 89.89%
• Codon Table: 11
• N50: 149,542 bp
• Contigs: 29
• Largest Contig: 409,838 bp
• Assembly Length: 1,356,939 bp
• Ambiguous Assembly Fraction: 0.0013%

Submitter comments

Genome quality including completeness, contamination was evaluated using CheckM v1.0.12 .Twenty marker proteins were excluded from the estimation due to the inherent absence in all Panguarchaeum symbiosum MAGs.16S and 23S rRNA sequences from MAGs were called using RNAmmer v1.2. tRNAs were detected using v2.0.9.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_024720975.1
• GTDB Tree: s__Panguiarchaeum symbiosum
• Wikispecies: Panguiarchaeum symbiosum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Hua, Zhengshuang about 2 years ago

Submitted by

Hua, Zhengshuang over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria (nomenclature)

Endorsed by

Rodriguez-R, Luis M over 1 year ago

Validated by

Rodriguez-R, Luis M over 1 year ago

Date of priority

2023-05-19 01:24 AM (UTC)