Panguiarchaeum symbiosumTs


Citation

Formal styling
Panguiarchaeum symbiosumTs Qu et al., 2023
Effective publication
Qu et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:d51mzlo9 (validated)
Cannonical URL
https://seqco.de/i:23983

Nomenclature

Rank
Species
Syllabication
sym.bi.o'sum
Etymology
Gr. masc. or fem. adj. symbios, companion; N.L. neut. adj. symbiosum, living together with, referring to the proposed symbiotic lifestyle
Nomenclatural type
NCBI Assembly: GCA_024720975.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Archaea that inhabit circumneutral, terrestrial geothermal systems and are likely hyperthermophiles. Genomes of this species lack annotated pathways for synthesis of membrane lipids, many amino acids, vitamins, and purines, suggesting they are likely to be symbiotic. Predicted to be obligately anaerobic and fermentative. 
Classification
Archaea » “Korarchaeota” » “Korarchaeia” » Panguiarchaeales » Panguiarchaeaceae » Panguiarchaeum » Panguiarchaeum symbiosumTs
Parent
Panguiarchaeum gtdb

Genomics

Accession
NCBI Assembly:GCA_024720975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 0.0%
  • Quality: 96.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
17.0 ×
Source
Other features
  • G+C Content: 40.21%
  • Coding Density: 89.89%
  • Codon Table: 11
  • N50: 149,542 bp
  • Contigs: 29
  • Largest Contig: 409,838 bp
  • Assembly Length: 1,356,939 bp
  • Ambiguous Assembly Fraction: 0.0013%
Submitter comments
Genome quality including completeness, contamination was evaluated using CheckM v1.0.12 .Twenty marker proteins were excluded from the estimation due to the inherent absence in all Panguarchaeum symbiosum MAGs.16S and 23S rRNA sequences from MAGs were called using RNAmmer v1.2. tRNAs were detected using v2.0.9.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Hua, Zhengshuang over 1 year ago
Submitted by
Hua, Zhengshuang about 1 year ago
Curators
Endorsed by
Rodriguez-R, Luis M 12 months ago
Validated by
Rodriguez-R, Luis M 12 months ago

Publications
1

Citation Title
Qu et al., 2023, Cell Reports Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum
Effective publication



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