Ruminococcus ruminiciens

Citation

Formal styling

Ruminococcus ruminiciens Moraïs et al., 2024

Effective publication

Moraïs et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:636yhucc (validated)

Canonical URL

https://seqco.de/i:24003

Nomenclature

Rank

Species

Etymology

L. neut. n. rumen, rumen; L. pres. part. ciens, rousing; N.L. part. adj. ruminiciens, rising as in the rumen

Nomenclatural type

NCBI Assembly: GCA_037465765.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

human and monkey gut bacteria

Classification

Bacteria » Bacillota » Clostridia » Eubacteriales » Oscillospiraceae » Ruminococcus » Ruminococcus ruminiciens

Parent

Ruminococcus

Genomics

Accession

NCBI Assembly:GCA_037465765.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.76%
• Contamination: 0.67%
• Quality: 94.41

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 16 amino acids

Sequencing depth

97.76 ×

Source

• BioSample: SAMN37643926
• BioSample: ERS396304

Other features

• G+C Content: 42.0%
• Coding Density: 88.45%
• Codon Table: 11
• N50: 31,772 bp
• Contigs: 113
• Largest Contig: 87,224 bp
• Assembly Length: 2,365,658 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_037465765.1
• Wikispecies: Ruminococcus ruminiciens (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 7 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Morais, Sarah almost 2 years ago

Submitted by

Morais, Sarah 8 months ago

Curators

• Palmer, Marike (nomenclature)
• Valero Tebar, Juan (genomics)

Validated by

Palmer, Marike 7 months ago

Date of priority

2024-03-27 09:19 AM (UTC)