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Pseudobacter hemicellulosilyticus

Citation

Formal styling
Pseudobacter hemicellulosilyticus Díaz-García et al., 2024
Effective publication
Díaz-García et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:-kiq_w89 (validated)
Canonical URL
https://seqco.de/i:24095

Nomenclature

Rank
Species
Syllabication
he.mi.cel.lu.lo.si.ly'ti.cus
Etymology
N.L. neut. n. hemicellulosum, hemicellulose; N.L. masc. adj. lyticus, able to dissolve; N.L. masc. adj. hemicellulosilyticus, hemicellulose dissolving
Nomenclatural type
INSDC Nucleotide: CP119311.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is established on the basis of MiGA taxonomic novelty analysis, the taxonomic placement using maximum likelihood trees with 120 bacterial marker genes (bac120) and and the type material is the genome MAG_7. Genomic metrics include ANI (69.21), AAI (65.96) and dDDH d4 (22.1). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 237 CAZymes, 99 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Bacteroidota » Chitinophagia » Chitinophagales » Chitinophagaceae » Pseudobacter » Pseudobacter hemicellulosilyticus
Parent
Pseudobacter gtdb

Genomics

Accession
INSDC Nucleotide:CP119311.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.74%
  • Quality: 96.3
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 50.93%
  • Coding Density: 89.55%
  • Codon Table: 11
  • N50: 6,743,228 bp
  • Contigs: 1
  • Largest Contig: 6,743,228 bp
  • Assembly Length: 6,743,228 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Díaz-García, Laura over 1 year ago
Submitted by
Díaz-García, Laura over 1 year ago
Curators
Endorsed by
Palmer, Marike over 1 year ago
Validated by
Palmer, Marike 11 months ago
Date of priority
2024-01-25 09:26 AM (UTC)

Publications
1

Citation Title
Díaz-García et al., 2024, Systematic and Applied Microbiology Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes
Effective publication


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