Microbacterium colombiense

Citation

Formal styling

Microbacterium colombiense Díaz-García et al., 2024

Effective publication

Díaz-García et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:-kiq_w89 (validated)

Canonical URL

https://seqco.de/i:24100

Nomenclature

Rank

Species

Syllabication

co.lom.bi.en'se.

Etymology

N.L. neut. adj. colombiense, belonging to Colombia

Nomenclatural type

INSDC Nucleotide: CP119308.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1911. Genomic metrics include ANI (85.9), AAI (81.1) and dDDH d4 (28.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 82 CAZymes, 30 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.

Classification

Bacteria » Actinomycetota » Actinomycetes » Micrococcales » Microbacteriaceae » Microbacterium » Microbacterium colombiense

Parent

Microbacterium gtdb

Genomics

Accession

INSDC Nucleotide:CP119308.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.56%
• Contamination: 0.51%
• Quality: 94.01

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMN33481873
• BioSample: SAMN33438288

Other features

• G+C Content: 68.19%
• Coding Density: 91.52%
• Codon Table: 11
• N50: 3,716,308 bp
• Contigs: 1
• Largest Contig: 3,716,308 bp
• Assembly Length: 3,716,308 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Tree: s__Microbacterium colombiense
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Microbacterium colombiense (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 7 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Díaz-García, Laura almost 2 years ago

Submitted by

Díaz-García, Laura over 1 year ago

Curators

• Palmer, Marike (nomenclature) (genomics)

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike 11 months ago

Date of priority

2024-01-25 09:26 AM (UTC)