Nanoclepta minutus^Ts

Citation

Formal styling

Nanoclepta minutus^Ts St. John et al., 2019 (valid 2022)

Effective publication

St. John et al., 2019

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:l5j9jhq3 (validated)

Canonical URL

https://seqco.de/i:319

Nomenclature

Rank

Species

Syllabication

mi.nu'tus

Etymology

L. masc. adj. minutus, small

Nomenclatural type

NCBI Assembly: GCA_003568775.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate ectosymbiont associated with the host Zestosphaera tikiterensis. Cells are coccoid, ~200 nm in diameter, with lophotrichous archaeal flagella. Best growth observed from 80-85°C. Cultivated under anaerobic conditions at pH 6.0. Isolated in co-culture with its host from "Cooking Pots" hot spring, Tikitere, New Zealand. The type material is strain Ncl-1, with a genome sequence available under NCBI WGS accession MWMI00000000 and Genbank assembly accession GCA_003568775.1. The genome consists of 575,637 bp in 9 contigs, with a G+C content of 32.2%.

Classification

Archaea » Nanobdellota » Nanobdellia » Nanobdellales » Nanobdellaceae » Nanoclepta » Nanoclepta minutus^Ts

Parent

Nanoclepta gtdb

Genomics

Accession

NCBI Assembly:GCA_003568775.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

86.68 ×

Source

• BioSample: SAMN06250747
• BioSample: SAMN06456794

Other features

• G+C Content: 32.2%
• Coding Density: 93.6%
• Codon Table: 11
• N50: 111,948 bp
• Contigs: 9
• Largest Contig: 193,791 bp
• Assembly Length: 575,637 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The Prokaryotic Genome Annotation Pipeline (PGAP) was used to identify tRNA and rRNA genes. Completion and contamination were estimated by CheckM. Although analysis with CheckM suggested low completeness, this was likely due to the reduced genome size typical of Nanoarchaeota. The program identified 120-121 archaeal marker genes, which is very similar to the number of marker genes (118-119) identified in the complete genomes of two other Nanoarchaeota, Cand. Nanopusillus acidilobi and Nanoarchaeum equitans (see St. John et al., 2019). For this reason, completion is estimated at 100%.

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003568775.1
• GTDB Tree: s__Nanoclepta minutus
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Nanoclepta minutus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

St. John, Emily about 2 years ago

Submitted by

St. John, Emily about 2 years ago

Curators

• Rodriguez-R, Luis M

Endorsed by

Rodriguez-R, Luis M about 2 years ago

Validated by

Rodriguez-R, Luis M about 2 years ago

Date of priority

2022-10-19 06:10 PM (UTC)