JSONPDF

Caldarchaeum subterraneumTs

Citation

Formal styling
Caldarchaeum subterraneumTs corrig. Nunoura et al., 2011 (priority 2026)
Effective publication
Nunoura et al., 2011
Corrigendum
Oren, 2017 from “Caldiarchaeum subterraneum” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:uafpbeg4 (validated)
Canonical URL
https://seqco.de/i:32063

Nomenclature

Rank
Species
Syllabication
sub.ter.ra'ne.um
Etymology
L. neut. adj. subterraneum, underground
Notes
This taxon was previously known as 10-H-08 and Fosmid clone No.10-H-08.
Nomenclatural type
Genome sc|0006251 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
C. subterraneum harbors an ubiquitin-like protein modifier system consisting of Ub, E1, E2 and small Zn RING finger family protein with structural motifs specific to eukaryotic system proteins, a system clearly distinct from the prokaryote-type system.   A composite genome was reconstructed from a metagenomic library previously prepared from a microbial mat at a geothermal water stream of a sub-surface gold mine. 
Classification
Archaea » Thermoproteota » “Caldarchaeia” » “Caldarchaeales” » “Caldarchaeaceae” » Caldarchaeum » Caldarchaeum subterraneumTs
Parent
Caldarchaeum assigned in Nunoura et al., 2011
Pseudonyms
  • Caldiarchaeum subterraneum (Original, corrected name)

Genomics

Accession
NCBI Assembly: GCA_000270325.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.3%
  • Contamination: 3.8%
  • Quality: 73.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 76.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 51.65%
  • Coding Density: 92.96%
  • Codon Table: 11
  • N50: 1,680,938 bp
  • Contigs: 1
  • Largest Contig: 1,680,938 bp
  • Assembly Length: 1,680,938 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 5 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 3 years ago by Van Lill, Melandre
Submitted
About 1 month ago by Rasmussen, Ejnar
Curators
Validated
About 20 hours ago by St. John, Emily
Date of priority
2026-08-24 12:19 PM (UTC)

Publications
2

Citation Title
Oren, 2017, International Journal of Systematic and Evolutionary Microbiology A plea for linguistic accuracy – also for Candidatus taxa
Corrigendum
Nunoura et al., 2011, Nucleic Acids Research Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
Effective publication
Assigned this taxon


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:uafpbeg4