JSONPDF

Electrothrix arhusiensis

Citation

Formal styling
Electrothrix arhusiensis corrig. Sereika et al., 2023 (valid 2024)
Effective publication
Sereika et al., 2023
Corrigendum
Plum-Jensen et al., 2024 from “Electrothrix aarhusiensis” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:mv2koe80 (validated)
Canonical URL
https://seqco.de/i:32137

Nomenclature

Rank
Species
Syllabication
ar.hu.si.en'sis
Etymology
N.L. fem. adj. arhusiensis, pertaining to Aarhus (in its medieval Latin form), a city in Denmark on the Jutland peninsula, referring to the place of the first discovery of cable bacteria
Nomenclatural type
NCBI Assembly: GCA_942491045.1
Reference strain
MAR-mqMAG
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Filamentous bacteria of centimeter length that inhabit the surface of marine and coastal sediment and conduct electrons from sulfide-oxidizing cells to oxygen- or nitrate-reducing cells. Gliding motility. Gram-negative, with distinct ridges running longitudinally along the filament. Can assimilate acetate and propionate; CO2 fixation via the Wood-Ljungdahl pathway. Contains c-type cytochromes and type IV pili (PilA). Polyphosphate and polyglucose storage. Distinguishable by morphology and genome.
Notes
Classification
Bacteria » Desulfobacterota » Desulfobulbia » Desulfobales » Desulfobulbaceae » Electrothrix » Electrothrix arhusiensis
Parent
Electrothrix gtdb assigned in Trojan et al., 2016
Pseudonyms
  • Electrothrix aarhusiensis (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_942491045.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.01%
  • Contamination: 3.55%
  • Quality: 72.26
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
619.0 ×
Source
Other features
  • G+C Content: 47.53%
  • Coding Density: 86.21%
  • Codon Table: 11
  • N50: 899,093 bp
  • Contigs: 9
  • Largest Contig: 1,305,763 bp
  • Assembly Length: 4,029,898 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
medium-quality MAG from hybrid assembly (9 contigs) of Illumina and Nanopore reads. Quality check by CheckM2.
Automated checks
Complete
See additional details
Last modified 4 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Schramm, Andreas 12 months ago
Submitted by
Schramm, Andreas 9 months ago
Curators
Validated by
Palmer, Marike 9 months ago
Date of priority
2024-02-27 01:52 AM (UTC)

Publications
6

Citation Title
Plum-Jensen et al., 2024, Systematic and Applied Microbiology First single-strain enrichments of Electrothrix cable bacteria, description of E. aestuarii sp. nov. and E. rattekaaiensis sp. nov., and proposal of a cable bacteria taxonomy following the rules of the SeqCode
Corrigendum
Geelhoed et al., 2023, Microbiology Spectrum Indications for a genetic basis for big bacteria and description of the giant cable bacterium Candidatus Electrothrix gigas sp. nov
Sereika et al., 2023, The ISME Journal Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria
Effective publication
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Kjeldsen et al., 2019, Proceedings of the National Academy of Sciences On the evolution and physiology of cable bacteria
Trojan et al., 2016, Systematic and Applied Microbiology A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema
Assigned this taxon


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license