Methanogranum gryphiswaldense^Ts

Citation

Formal styling

Methanogranum gryphiswaldense^Ts Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:gyhq89gf (validated)

Canonical URL

https://seqco.de/i:32536

Nomenclature

Rank

Species

Syllabication

gry.phis.wald.en'se

Etymology

N.L. neut. adj. gryphiswaldense, pertaining to Gryphiswald, the Latin name of the town Greifswald in Germany.

Nomenclatural type

NCBI Assembly: GCA_019262145.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. The G+C content of the type genome is 43.7 mol%, and the genome size is 1.51 Mbp.

Classification

Archaea » Methanobacteriota » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanogranum » Methanogranum gryphiswaldense^Ts

Parent

Methanogranum assigned in Weil et al., 2021

Genomics

Accession

NCBI Assembly:GCA_019262145.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.6%
• Contamination: 0.0%
• Quality: 99.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

300.0 ×

Source

• BioSample: SAMN19693782
• BioSample: SAMN19296169

Other features

• G+C Content: 43.73%
• Coding Density: 90.65%
• Codon Table: 11
• N50: 1,516,968 bp
• Contigs: 1
• Largest Contig: 1,516,968 bp
• Assembly Length: 1,516,968 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• NCBI Taxonomy: 2848114
• GTDB Genome: GCA_019262145.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanogranum gryphiswaldense (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii about 1 year ago

Submitted by

Protasov, Evgenii 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Chuvochina, Maria (nomenclature)

Endorsed by

Chuvochina, Maria 4 months ago

Validated by

Chuvochina, Maria 4 months ago

Date of priority

2024-06-17 08:09 AM (UTC)