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Methanorbis rubei

Citation

Formal styling
Methanorbis rubei Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32573

Nomenclature

Rank
Species
Syllabication
ru'be.i
Etymology
L. gen. masc. n. rubei, of the red, referring to the color of the host.
Nomenclatural type
NCBI Assembly: GCA_032714495.1
Reference strain
Cs1 = DSM 115765
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Ovoid cocci cells 1–3 µm. Non-motile. H2 and CO2 are the substrates for methanogenesis; formate can substitute H2. Yeast extract stimulates growth. The optimum temperature is 33 °C.  The G+C content of the type genome is 50.2 mol%, and the genome size is 1.82 Mbp.
Classification
Archaea » Methanobacteriota » “Methanomicrobia” » Methanomicrobiales » Methanocorpusculaceae » Methanorbis » Methanorbis rubei
Parent
Methanorbis ncbi

Genomics

Accession
NCBI Assembly:GCA_032714495.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.3%
  • Contamination: 1.3%
  • Quality: 91.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
253.0 ×
Source
Other features
  • G+C Content: 50.2%
  • Coding Density: 87.27%
  • Codon Table: 11
  • N50: 299,484 bp
  • Contigs: 15
  • Largest Contig: 371,544 bp
  • Assembly Length: 1,829,609 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 4 days ago

Metadata

Outside links and data sources
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Local history
Registered by
Protasov, Evgenii about 1 year ago
Submitted by
Protasov, Evgenii 7 months ago
Curators
Validated by
Rodriguez-R, Luis M 6 months ago
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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