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Methanorbis rubei

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Methanorbis rubei Protasov et al., 2023 (priority 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32573

Nomenclature

Rank
Species
Syllabication
ru'be.i
Etymology
L. gen. masc. n. rubei, of the red, referring to the color of the host.
Nomenclatural type
NCBI Assembly: GCA_032714495.1
Reference strain
Strain sc|0038663: Cs1 = DSM 115765 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Ovoid cocci cells 1–3 µm. Non-motile. H2 and CO2 are the substrates for methanogenesis; formate can substitute H2. Yeast extract stimulates growth. The optimum temperature is 33 °C.  The G+C content of the type genome is 50.2 mol%, and the genome size is 1.82 Mbp.
Classification
Archaea » Methanobacteriota » “Methanomicrobia” » Methanomicrobiales » Methanocorpusculaceae » Methanorbis » Methanorbis rubei
Parent
Methanorbis ncbi

Genomics

Accession
NCBI Assembly:GCA_032714495.1
Cultures
Strain sc|0038663
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.3%
  • Contamination: 1.3%
  • Quality: 91.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
253.0 ×
Source
Other features
  • G+C Content: 50.2%
  • Coding Density: 87.27%
  • Codon Table: 11
  • N50: 299,484 bp
  • Contigs: 15
  • Largest Contig: 371,544 bp
  • Assembly Length: 1,829,609 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Protasov, Evgenii
Submitted
Over 2 years ago by Protasov, Evgenii
Curators
Validated
About 2 years ago by Rodriguez-R, Luis M
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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seqco.de/r:hfttq0ec