Taurinivorans murisTs


This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Taurinivorans murisTs Ye et al., 2023 (priority 2024)
Effective publication
Ye et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pzblpla3 (validated)
Canonical URL
https://seqco.de/i:32703

Nomenclature

Rank
Species
Syllabication
mu'ris
Etymology
L. gen. n. muris, of a mouse, referring to its origin from the mouse intestine
Nomenclatural type
NCBI Assembly: GCA_025232395.1
Reference strain
Strain sc|0038668: LT0009 = DSM 111569 = JCM 34262 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Taurinivorans muris sp. nov. (mu'ris. L. gen. n. muris, of a mouse, referring to its origin from the mouse intestine). The type strain is strain LT0009 (= DSM 111569 = JCM 34262), isolated from the mouse gut with taurine as the electron acceptor and lactate/pyruvate as electron donors. Formate was also used as an electron donor for taurine respiration.Cells are Gram-stain-negative, spirilloid in shape, and motile by means of lophotrichous polar flagella. The temperature range is 27-42°C and the optimum pH is 6.5 (range 6-8.5) for strictly anaerobic growth. The optimal taurine concentration for growth is 40 mmol/l, higher taurine concentrations inhibit growth. Sulfolactate and thiosulfate are additional electron acceptors for anaerobic respiration and are also reduced to hydrogen sulfide. Yeast extract and 1,4-naphthoquinone are required as growth supplements for laboratory cultivation of the isolate. Its genome size is 2.2 Mbp with a G+C content of 43.6%. The GenBank accession numbers for the genome and the 16S rRNA gene sequence of strain LT0009T are CP065938 and MW258658, respectively.
Classification
Bacteria » Desulfobacterota » Desulfovibrionia » Desulfovibrionales » Desulfovibrionaceae » Taurinivorans » Taurinivorans murisTs
Parent
Taurinivorans ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_025232395.1
Cultures
Strain sc|0038668
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 4 16S rRNAs (up to 100.0%)
  • 4 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
30.0 ×
Source
Other features
  • G+C Content: 43.6%
  • Coding Density: 89.13%
  • Codon Table: 11
  • N50: 2,172,708 bp
  • Contigs: 1
  • Largest Contig: 2,172,708 bp
  • Assembly Length: 2,172,708 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Loy, Alexander
Submitted
Over 2 years ago by Loy, Alexander
Curators
Endorsed
Over 2 years ago by Palmer, Marike
Validated
Over 2 years ago by Palmer, Marike
Date of priority
2024-01-11 02:56 PM (UTC)

Publications
1

Citation Title
Ye et al., 2023, Nature Communications Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut
Effective publication



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