Xiheicaenibacterium phototrophicum^Ts

Citation

Formal styling

Xiheicaenibacterium phototrophicum^Ts corrig. Li et al., 2023 (priority 2025)

Effective publication

Li et al., 2023

Corrigendum

In SeqCode Registry from “Xihecaenibacterium phototrophica” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:kouay5c4 (validated)

Canonical URL

https://seqco.de/i:32851

Nomenclature

Rank

Species

Syllabication

pho.to'tro.phi.cum

Etymology

Gr. n. phos, photos light; Gr. adj. trophikos, nursing, tending or feeding; N.L. neut. adj. phototrophicum, referring to the likely ability to use light for energy generation

Nomenclatural type

NCBI Assembly: GCA_016794345.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The nomenclatural type for the species is the genomic assembly LLY-WYZ-9_1 (GCA_016794345.1). Genome is predicted to 9.66 Mb in 321 scaffolds. The GC content is 69.69%. Genome has complete bacteriochlorophyll synthesis pathways, and encodes reaction center proteins and other key enzymes, suggesting potential phototrophic lifestyle. Genome for this species originated from activated sludge.

Classification

Bacteria » Myxococcota » Polyangiia » Polyangiales » Polyangiaceae » Xiheicaenibacterium » Xiheicaenibacterium phototrophicum^Ts

Parent

Xiheicaenibacterium

Pseudonyms

• Xihecaenibacterium phototrophica (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_016794345.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.16%
• Contamination: 4.43%
• Quality: 72.01

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

5.0 ×

Source

• BioSample: SAMN17180970
• And 33 more…

Other features

• G+C Content: 69.69%
• Coding Density: 93.08%
• Codon Table: 11
• N50: 89,432 bp
• Contigs: 321
• Largest Contig: 358,479 bp
• Assembly Length: 9,664,394 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM1 was used for genome quality evaluation.

The genome assembly exhibits variability in completeness and contamination estimates across assessment tools:

• CheckM1: Completeness = 94.16%, Contamination = 4.43%
• CheckM2: Completeness = 97.72%, Contamination = 5.43%
• MiGA: Completeness = 99.1%, Contamination = 5.7%

Automated checks

Complete

See additional details

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Last modified 4 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016794345.1
• Wikispecies: Xiheicaenibacterium phototrophicum
• Wikidata: Q136334539

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered

About 2 years ago by Li, Liuyang

Submitted

4 months ago by Li, Liuyang

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

3 months ago by Palmer, Marike

Date of priority

2025-08-05 02:09 PM (UTC)