Kaelpia aquaticaTs


Citation

Formal styling
Kaelpia aquaticaTs Williams et al., 2021 (valid 2024)
Effective publication
Williams et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:2rggbgyb (validated)
Canonical URL
https://seqco.de/i:33284

Nomenclature

Rank
Species
Syllabication
a.qua'ti.ca
Etymology
L. fem. adj. aquatica, living or found in the water.
Nomenclatural type
NCBI Assembly: GCA_030765335.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Kaelpia. The description for this species is derived from Williams et al., 2021, and supplemented with additional information. This species is predicted to be heterotrophic, with a horse-shoe type TCA cycle, and encodes to proteases and peptidases to degrade proteins to amino acids. Simple sugar ABC transporters and glycoside hydrolases, along with the ability to synthesize trehalose and glycogen is predicted, and genes for the fermentation of glucose to acetyl-CoA through EMP pathway is present. A V-type ATPase and Rnf complex for ATP synthesis is present, and a Group A3 [FeFe] hydrogenase is encoded by this genome. The genome also encodes a conductive pilin and all genes associated with the production of a Type-4a pilus is present. The nomenclatural type for the species is the genome 3300035698_2000.
Classification
Incertae sedis (Bacteria) » “Kaelpiales” » “Kaelpiaceae” » Kaelpia » Kaelpia aquaticaTs
Parent
Kaelpia gtdb

Genomics

Accession
NCBI Assembly:GCA_030765335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.94%
  • Contamination: 0.75%
  • Quality: 95.19
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 7.0%)
  • 1 23S rRNA (up to 8.0%)
  • tRNAs for 19 amino acids
Sequencing depth
35.0 ×
Source
Other features
  • G+C Content: 37.25%
  • Coding Density: 93.47%
  • Codon Table: 11
  • N50: 53,877 bp
  • Contigs: 46
  • Largest Contig: 84,421 bp
  • Assembly Length: 1,339,195 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Allen, Michelle 12 months ago
Submitted by
Allen, Michelle 2 months ago
Curators
Validated by
Palmer, Marike 21 days ago
Date of priority
2024-09-04 06:09 AM (UTC)

Publications
1

Citation Title
Williams et al., 2021, Frontiers in Microbiology Shedding Light on Microbial “Dark Matter”: Insights Into Novel Cloacimonadota and Omnitrophota From an Antarctic Lake
Effective publication



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