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Acidiparvus lacustrisTs

Citation

Formal styling
Acidiparvus lacustrisTs Wong et al., 2024 (priority 2025)
Effective publication
Wong et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:jwkiamk2 (validated)
Canonical URL
https://seqco.de/i:33343

Nomenclature

Rank
Species
Syllabication
la.cus'tris
Etymology
N.L. masc. adj. lacustris, of a lake, resides in freshwater environments
Nomenclatural type
NCBI Assembly: GCA_963970155.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This is a novel genus of a genome streamlined Acidobacteriota, under the family Holophagaceae. They are the only genus under the family Holophagaceae to have extremely small genome size and limited metabolic capacity. Acidoparvus lacustris are exclusively found in freshwater lakes. We assembled two complete genomes from Acidoparvus lacustris, in which we will choose one as the type genome.
Classification
Bacteria » Acidobacteriota » Holophagae » Holophagales » Holophagaceae » Acidiparvus » Acidiparvus lacustrisTs
Parent
Acidiparvus

Genomics

Accession
NCBI Assembly:GCA_963970155.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.12%
  • Contamination: 0.22%
  • Quality: 95.02
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 46.5%
  • Coding Density: 94.16%
  • Codon Table: 11
  • N50: 1,209,613 bp
  • Contigs: 1
  • Largest Contig: 1,209,613 bp
  • Assembly Length: 1,209,613 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Assembly with Flye, binning with MetaBAT2, and quality assessment with CheckM.
Automated checks
Complete
See additional details
Last modified 25 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Wong, Hon Lun
Submitted
8 months ago by Wong, Hon Lun
Curators
Endorsed
8 months ago by Rodriguez-R, Luis M
Validated
22 days ago by Palmer, Marike
Date of priority
2025-04-29 02:48 PM (UTC)

Publications
1

Citation Title
Wong et al., 2024, ISME Communications Ubiquitous genome streamlined Acidobacteriota in freshwater environments
Effective publication


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seqco.de/r:jwkiamk2