Nanoarchaeum equitansTs


Citation

Formal styling
Nanoarchaeum equitansTs Huber et al., 2002 (priority 2025)
Effective publication
Huber et al., 2002
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:08kd-qkd (validated)
Canonical URL
https://seqco.de/i:35129

Nomenclature

Rank
Species
Syllabication
e.qui'tans
Etymology
L. neut. part. adj. equitans, riding, referencing the ectosymbiotic interaction between this organism and its archaeal host, Ignicoccus hospitalis
Nomenclatural type
NCBI Assembly: GCA_000008085.1
Reference strain
Strain sc|0040527: Kin4-M Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Huber et al., 2002 - first description of Nanoarchaeum equitans:
"Cells of ‘N. equitans’ are spherical, and only about 400 nm in diameter. They grow attached to the surface of a specific archaeal host, a new member of the genus Ignicoccus. The distribution of the ‘Nanoarchaeota’ is so far unknown. Owing to their unusual ss rRNA sequence, members remained undetectable by commonly used ecological studies based on the polymerase chain reaction. ‘N. equitans’ harbours the smallest archaeal genome; it is only 0.5 megabases in size."

Waters et al., 2003 - genome of Nanoarchaeum equitans published:
The hyperthermophile Nanoarchaeum equitans is an obligate symbiont growing in coculture with the crenarchaeon Ignicoccus. Ribosomal protein and rRNA-based phylogenies place its branching point early in the archaeal lineage, representing the new archaeal kingdom Nanoarchaeota. The N. equitans genome (490,885 base pairs) encodes the machinery for information processing and repair, but lacks genes for lipid, cofactor, amino acid, or nucleotide biosyntheses. It is the smallest microbial genome sequenced to date, and also one of the most compact, with 95% of the DNA predicted to encode proteins or stable RNAs. Its limited biosynthetic and catabolic capacity indicates that N. equitans’ symbiotic relationship to Ignicoccus is parasitic, making it the only known archaeal parasite. Unlike the small genomes of bacterial parasites that are undergoing reductive evolution, N. equitans has few pseudogenes or extensive regions of noncoding DNA. This organism represents a basal archaeal lineage and has a highly reduced genome.
Classification
Archaea » Nanobdellota » Nanobdellia » Nanobdellales » “Nanoarchaeaceae” » Nanoarchaeum » Nanoarchaeum equitansTs
Parent
Nanoarchaeum ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_000008085.1
Cultures
Strain sc|0040527
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 98.41%
  • Contamination: 0.41%
  • Quality: 96.36
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Source
Other features
  • G+C Content: 31.56%
  • Coding Density: 94.75%
  • Codon Table: 11
  • N50: 490,885 bp
  • Contigs: 1
  • Largest Contig: 490,885 bp
  • Assembly Length: 490,885 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 v1.1.0 assessment estimates completion ranges from 96.85 to 98.41% (general and specific model, respectively). However, this is a closed, complete genome. 
Automated checks
Complete

Last modified 2 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed about 1 month ago by St. John, Emily
Submitted
About 1 month ago by St. John, Emily
Curators
Validated
2 days ago by Rodriguez-R, Luis M
Date of priority
2025-11-20 06:04 PM (UTC)

Publications
2

Citation Title
Waters et al., 2003, Proceedings of the National Academy of Sciences The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
Huber et al., 2002, Nature A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
Effective publication



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