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“Solincola sediminis”

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Citation

Formal styling
“Solincola sediminis” Jiao et al., 2021
Effective publication
Jiao et al., 2021
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:42959

Nomenclature

Rank
Species
Syllabication
se.di'mi.nis
Etymology
L. gen. singular (n. ) sedimentum, Sediment-derived; L. gen. n. sediminis, Of a sediment, referring to the source of the genome
Nomenclatural type
Genome sc|0006421 Ts

Taxonomy

Description
The species is the type of the genus Ca. Solincola, within Ca. Geothermincolaceae. It has 3 rRNAs, 47 tRNAs and at least 2,500 protein-coding genes. The type material is derived from subsurface sediment in Rifle, Colorado, USA. It is predicted to be an anaerobic homoacetogen but has not been cultivated. 
Classification
Bacteria » Actinomycetota » “Geothermincolia” » “Geothermincolales” » “RBG-13–55-18” » “Solincola” » “Solincola sediminis”
Parent
“Solincola” gtdb

Genomics

Accession
NCBI Assembly: GCA_001767605.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.3%
  • Contamination: 0.9%
  • Quality: 90.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Source
Other features
  • G+C Content: 54.1%
  • Coding Density: 90.35%
  • Codon Table: 11
  • N50: 62,564 bp
  • Contigs: 63
  • Largest Contig: 194,939 bp
  • Assembly Length: 2,554,379 bp
  • Ambiguous Assembly Fraction: 0.84%
Automated checks
Complete
See additional details
Last modified 30 minutes ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago and claimed about 1 hour ago by Rasmussen, Ejnar

Publications
1

Citation Title
Jiao et al., 2021, The ISME Journal Insight into the function and evolution of the Wood–Ljungdahl pathway in Actinobacteria
Effective publication


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