Uabimicrobium amorphumTs


Citation

Formal styling
Uabimicrobium amorphumTs corrig. Shiratori et al., 2019 (priority 2026)
Effective publication
Shiratori et al., 2019
Corrigendum
Oren, Garrity, 2021 from “Uab amorphum” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:n0_hspo1 (validated)
Canonical URL
https://seqco.de/i:43481

Nomenclature

Rank
Species
Syllabication
a.mor'phum
Etymology
N.L. neut. adj. amorphum, without shape
Nomenclatural type
NCBI Assembly: GCF_009002475.1
Reference strain
Strain sc|0041736: JCM 39082 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Shiratori et al. (2019): Marine free-living aerobic Gram-negative bacterium was collected from surface seawater in the Republic of Palau (7.181386° N, 134.336947° E). Cells are flattened and round or oval shape with granular cytoplasm. Flagellum is absent. Cells were 3.2–7.8 μm (4.5 ± 0.85 μm) in the long axis and 2.8–5.5 μm (4.0 ± 0.57 μm) in the short axis (n = 79). When prey bacteria were abundant in the culture, cells occasionally reached 10 μm in diameter. Cells attach to substrate and show gliding motility with changing shape. Cells reproduce by binary fission. Periplasm (or paryphoplasm) highly invaginates into the cytoplasm (or pirellulosome) and shows a reticulate pattern. The cytoplasm includes multiple nuclear bodies. The cell interior includes four types of fibrous structures: large striated fibres, small striated fibres, short bundle fibres and cylindrical structures that contain linear fibres. Cells can engulf bacteria and picoeukaryotes (Bathycoccus prasinos). Engulfed bacteria and algae can be found in phagosome-like vacuoles (PVs). Some PVs connect to other phagosome-like structures or outside of the cell by narrow ducts. Similarity of the 16S rRNA gene sequence (LC496071) to that of the closest species (the planctomycete ‘Candidatus Kuenenia stuttgartiensis’) is 79% . The genome of ‘Ca. Uab amorphum’ (AP019860) is circular and 9,503,110 bp in size. The G + C content of the genome is 39.4 mol%. A co-culture of ‘Ca. Uab amorphum’ has been deposited at the JCM as JCM 39082.
Classification
Bacteria » Planctomycetota » Uabimicrobiia » Uabimicrobiales » Uabimicrobiaceae » Uabimicrobium » Uabimicrobium amorphumTs
Parent
Uabimicrobium gtdb
Pseudonyms
  • Uab amorphum (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCF_009002475.1
Cultures
Strain sc|0041736
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 97.41%
  • Contamination: 3.76%
  • Quality: 78.61
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
150.0 ×
Source
Other features
  • G+C Content: 39.38%
  • Coding Density: 91.33%
  • Codon Table: 11
  • N50: 9,503,417 bp
  • Contigs: 1
  • Largest Contig: 9,503,417 bp
  • Assembly Length: 9,503,417 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination was estimated with CheckM (v. 1.2.4) 
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago and claimed 3 months ago by Nguyen, Huong
Submitted
About 2 months ago by Nguyen, Huong
Curators
Validated
10 days ago by St. John, Emily
Date of priority
2026-06-17 07:13 AM (UTC)

Publications
3

Citation Title
Wurzbacher et al., 2024, mBio Candidatus Uabimicrobium helgolandensis”—a planctomycetal bacterium with phagocytosis-like prey cell engulfment, surface-dependent motility, and cell division
Oren, Garrity, 2021, International Journal of Systematic and Evolutionary Microbiology Candidatus List No. 2. Lists of names of prokaryotic Candidatus taxa
Corrigendum
Shiratori et al., 2019, Nature Communications Phagocytosis-like cell engulfment by a planctomycete bacterium
Effective publication



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