Lloretia debeseaTs


Citation

Formal styling
Lloretia debeseaTs Gago et al., 2024
Effective publication
Gago et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:4u3eoyk5 (validated)
Cannonical URL
https://seqco.de/i:43916

Nomenclature

Rank
Species
Syllabication
de.be.se'a
Etymology
N.L. fem. adj. debesea, arbitrary name formed from the DBSE (Deep Blue Sea Enterprise)
Nomenclatural type
NCBI Assembly: GCA_963986085.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species Lloretia debesea sp. nov. is the type to the new genus Lloretia gen. nov. This genus is also the type for the new family Lloretiaceae fam. nov. The MAG encodes for the complete set of complexes for the oxidative electron transport phosphorylation chain, suggesting an aerobic respiration. Despite aerobic respiration, the microorganism seems to be capable of dissimilatory nitrate reduction. Predicted central carbon metabolism indicated a heterotrophic-based lifestyle, encoding all the genes for glycolysis, non-oxidative pentose phosphate pathway, pyruvate oxidation and glycogen degradation, and also including the near-complete Krebs cycle. Genes could not be detected for oxidase, catalase and lysine decarboxylase, and also those involved in motility. The MAG originates from groundwater on the island of Mallorca. The type material is strain T5.010, with a genome sequence available under ENA accession GCA_963583845.
Classification
Bacteria » Elusimicrobiota » Elusimicrobia » Elusimicrobiales » Lloretiaceae » Lloretia » Lloretia debeseaTs
Parent
Lloretia

Genomics

Accession
NCBI Assembly:GCA_963986085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.6%
  • Contamination: 2.25%
  • Quality: 82.35
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
39.7 ×
Source
Other features
  • G+C Content: 64.1%
  • Coding Density: 93.06%
  • Codon Table: 11
  • N50: 45,948 bp
  • Contigs: 136
  • Largest Contig: 183,324 bp
  • Assembly Length: 2,991,132 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM was used to assess the completeness and contamination of the MAG.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Gago, Juan F. 4 months ago
Submitted by
Gago, Juan F. 3 months ago
Curators
Endorsed by
Palmer, Marike 3 months ago
Validated by
Palmer, Marike about 1 month ago

Publications
1

Citation Title
Gago et al., 2024, Systematic and Applied Microbiology Metagenomics of two aquifers with thermal anomalies in Mallorca Island, and proposal of new uncultivated taxa named following the rules of SeqCode
Effective publication



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