Amarobacter glycogenicus^Ts

Citation

Formal styling

Amarobacter glycogenicus^Ts Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:44010

Nomenclature

Rank

Species

Syllabication

gly.co.ge'ni.cus

Etymology

N.L. masc. adj. glycogenicus, indicating the presence of intracellular glycogen

Nomenclatural type

NCBI Assembly: GCA_016719395.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species of rod-shape bacteria abundant in activated sludge, established on the basis of MiGA taxonomic novelty analyses, ANI, 16S rRNA gene phylogenetic reconstruction, FISH and phylogenomic analyses.

Classification

Bacteria » Chloroflexota » Tepidiformia » Tepidiformales » Tepidiformaceae » Amarobacter » Amarobacter glycogenicus^Ts

Parent

Amarobacter assigned in Petriglieri et al., 2023

Genomics

Accession

NCBI Assembly:GCA_016719395.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.04%
• Contamination: 0.99%
• Quality: 91.09

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

11.0 ×

Source

• BioSample: SAMN16426249
• BioSample: SAMN14825708

Other features

• G+C Content: 65.53%
• Coding Density: 89.49%
• Codon Table: 11
• N50: 275,877 bp
• Contigs: 17
• Largest Contig: 449,486 bp
• Assembly Length: 3,446,936 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016719395.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Amarobacter glycogenicus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 10 months ago

Submitted by

Petriglieri, Francesca 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-26 11:27 AM (UTC)