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Chordibacter forsetiiTs

Citation

Formal styling
Chordibacter forsetiiTs Wilkie, Orellana, 2025
Effective publication
Wilkie, Orellana, 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:vjimgryf (validated)
Canonical URL
https://seqco.de/i:44036 Copy

Nomenclature

Rank
Species
Syllabication
for.se.ti'i
Etymology
N.L. gen. masc. n. forsetii, of Forseti, the Scandinavian god of justice and reconciliation resident on Helgoland
Nomenclatural type
NCBI Assembly: GCA_964187505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Members of the Chordibacter genus are predicted to be aerobic and heterotrophic marine bacteria dwelling in surface waters. A total of 17 MAGs belonging to this genus were recovered in the 2011, 2012, 2016, and 2018 Helgoland spring blooms. This genome is estimated to be 92.7% complete with 2.2% redundancy. It has a GC content of 44.3% and a genome size of 2.12 Mbp. The 5S, 16S, and 23S rRNA genes were identified in the genome. Chordibacter forsetii belongs to the family MB11C04, order Opitutales, class Verrucomicrobiae, and phylum Verrucomicrobiota. Formerly identified as genus MB11C04 and species MB11C04. A FISH probe for this family has been developed (probe c17-1166 from Orellana et al., 2022) and previously used to describe that members of this genus are short rods of length and width 0.9 and 0.8 µm respectively (Orellana et al., 2022). The type species is Chordibacter forsetii and the corresponding type material is the metagenome-assembled genome ERZ814923, which shows 99.3% ANI to a previously described representative of the MB11C04 family (MB1 from Orellana et al., 2022).
Classification
Bacteria » Verrucomicrobiota » Opitutia » Opitutales » Seribacteraceae » Chordibacter » Chordibacter forsetiiTs
Parent
Chordibacter

Genomics

Accession
NCBI Assembly:GCA_964187505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.7%
  • Contamination: 2.2%
  • Quality: 81.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
17.13 ×
Source
Other features
  • G+C Content: 44.3%
  • Coding Density: 94.28%
  • Codon Table: 11
  • N50: 12,102 bp
  • Contigs: 231
  • Largest Contig: 84,310 bp
  • Assembly Length: 2,118,992 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
  • The GC content was assessed using anvio-8 
  • Completeness and redundancy values were determined using checkM v1.1.3
  • The presence of tRNA elements was assessed using prokka v1.14.6
  • The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
  • The sequencing depth of the MAG was assessed using samtools v1.17. Readmapping of the MAG was conducted against the metagenome from which it was recovered, and depth was determined using samtools coverage. The reported "mean depth" per contig was then averaged to get the depth of the entire MAG
Automated checks
Complete
See additional details
Last modified 10 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Wilkie, Isabella Maria
Submitted
About 1 year ago by Wilkie, Isabella Maria
Curators
Endorsed
12 months ago by Rodriguez-R, Luis M
Validated
23 days ago by Palmer, Marike
Date of priority
2025-08-04 08:20 AM (UTC)

Publications
2

Citation Title
Wilkie, Orellana, 2025, Systematic and Applied Microbiology Elusive marine Verrucomicrobiota: Seasonally abundant members of the novel genera Seribacter and Chordibacter specialize in degrading sulfated glycans
Effective publication
Orellana et al., 2022, The ISME Journal Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms


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seqco.de/r:vjimgryf