Seribacter sulfatisTs


Citation

Formal styling
Seribacter sulfatisTs Wilkie, Orellana, 2025
Effective publication
Wilkie, Orellana, 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:vjimgryf (validated)
Canonical URL
https://seqco.de/i:44037 Copy

Nomenclature

Rank
Species
Syllabication
sul.fa'tis
Etymology
N.L. gen. n. sulfatis, of sulfate, referring to the Marine Verrucomicrobiota encoding many sulfatases
Nomenclatural type
NCBI Assembly: GCA_964187635.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Members of the Seribacter genus are predicted to be aerobic and heterotrophic marine bacteria dwelling in surface waters. A total of 45 MAGs belonging to this genus were recovered in the 2010, 2011, 2012, 2016, 2018 and 2020 Helgoland spring blooms. This genome is estimated to be 94.2% complete with 0% redundancy. It has a GC content of 42.6% and a genome size of 2.53 Mbp. The 5S, 16S, and 23S rRNA genes were identified in the genome (Table S8). Seribacter sulfatis belongs to the family Seribacteraceae fam. nov., order Opitutales, class Verrucomicrobiae, and phylum Verrucomicrobiota.  Formerly identified as genus MB11C04 and species MB11C04, in the family MB11C04. A FISH probe for this family has been developed  (probe c21-472 from Orellana et al., 2022) and previously used to describe that members of this genus are short rods of length and width 1.2 and 1.0 µm respectively (Orellana et al., 2022). The type species is Seribacter sulfatis and the corresponding type material is the metagenome-assembled genome ERZ816379, which shows 99.5% ANI to a previously described representative of the MB11C04 family (MB5 from Orellana et al., 2022).
Classification
Bacteria » Verrucomicrobiota » Opitutia » Opitutales » Seribacteraceae » Seribacter » Seribacter sulfatisTs
Parent
Seribacter

Genomics

Accession
NCBI Assembly:GCA_964187635.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.2%
  • Contamination: 0.0%
  • Quality: 94.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
8.1 ×
Source
Other features
  • G+C Content: 42.6%
  • Coding Density: 93.82%
  • Codon Table: 11
  • N50: 34,059 bp
  • Contigs: 122
  • Largest Contig: 94,596 bp
  • Assembly Length: 2,532,561 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
  •  The GC content was assessed using anvio-8
  •  Completeness and redundancy values were determined using checkM v1.1.3
  •  The presence of tRNA elements was assessed using prokka v1.14.6
  •  The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
  •  The sequencing depth of the MAG was assessed using samtools v1.17. Readmapping of the MAG was conducted against the metagenome from which it was recovered, and depth was determined using samtools coverage. The reported "mean depth" per contig was then averaged to get the depth of the entire MAG
Automated checks
Complete

Last modified 10 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Wilkie, Isabella Maria
Submitted
About 1 year ago by Wilkie, Isabella Maria
Curators
Endorsed
12 months ago by Rodriguez-R, Luis M
Validated
23 days ago by Palmer, Marike
Date of priority
2025-08-04 08:20 AM (UTC)

Publications
2

Citation Title
Wilkie, Orellana, 2025, Systematic and Applied Microbiology Elusive marine Verrucomicrobiota: Seasonally abundant members of the novel genera Seribacter and Chordibacter specialize in degrading sulfated glycans
Effective publication
Orellana et al., 2022, The ISME Journal Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms



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seqco.de/r:vjimgryf