Caldisaccharidevorator sinensisTs


Citation

Formal styling
Caldisaccharidevorator sinensisTs Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44083

Nomenclature

Rank
Species
Syllabication
si.nen'sis
Etymology
N.L. masc. adj. sinensis, of China, the country where this organism is from
Nomenclatural type
INSDC Nucleotide: JAVKTG000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Genomes of this species were recovered from metagenomes from the geothermal spring Qiao Quan, in Tengchong, China. The GC content is approximately 56%. The low-affinity terminal oxidase CoxABC is encoded by genomes of the species.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Caldisaccharidevorator » Caldisaccharidevorator sinensisTs
Parent
Caldisaccharidevorator

Genomics

Accession
INSDC Nucleotide:JAVKTG000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.51%
  • Contamination: 1.81%
  • Quality: 82.46
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
43.0 ×
Source
Other features
  • G+C Content: 56.5%
  • Coding Density: 93.46%
  • Codon Table: 11
  • N50: 1,839,449 bp
  • Contigs: 2
  • Largest Contig: 1,839,449 bp
  • Assembly Length: 2,682,418 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 9 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 5 months ago
Validated by
St. John, Emily 30 days ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication



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