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Phosphoribacter thorii

Citation

Formal styling
Phosphoribacter thorii Kondrotaite et al., 2025
Effective publication
Kondrotaite et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:yj2wcqod (validated)
Canonical URL
https://seqco.de/i:49008

Nomenclature

Rank
Species
Syllabication
tho.ri'i
Etymology
N.L. gen. n. thorii, of Thor, Norse god of thunder
Nomenclatural type
NCBI Assembly: GCA_016715285.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
 The MAG representative for this species was isolated from activated sludge, wastewater treatment plant located in Mariagerfjord, Denmark 

Classification
Bacteria » Actinomycetota » Actinomycetes » Micrococcales » Dermatophilaceae » Phosphoribacter » Phosphoribacter thorii
Parent
Phosphoribacter assigned in Singleton et al., 2022

Genomics

Accession
NCBI Assembly:GCA_016715285.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.22%
  • Contamination: 2.16%
  • Quality: 85.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
13.3578 ×
Source
Other features
  • G+C Content: 66.66%
  • Coding Density: 90.2%
  • Codon Table: 11
  • N50: 460,571 bp
  • Contigs: 12
  • Largest Contig: 685,773 bp
  • Assembly Length: 3,282,635 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11.
Genome taxonomy was determined using GTDB-Tk v1.0.2 and the refseq release 89 (2019-06-19) database, and the dependencies pplacer v1.1, FastANI v1.2, Prodigal v2.6.2, FastTree 2 v1.2, and HMMER v3.1b2. 
Automated checks
Complete
See additional details
Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Nielsen, Per H.
Submitted
7 months ago by Nielsen, Per H.
Curators
Endorsed
6 months ago by Palmer, Marike
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-25 06:55 AM (UTC)

Publications
2

Citation Title
Kondrotaite et al., 2025, mSystems Ecophysiology and niche differentiation of three genera of polyphosphate-accumulating bacteria in a full-scale wastewater treatment plant
Effective publication
Singleton et al., 2022, The ISME Journal The novel genus, ‘Candidatus Phosphoribacter’, previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide
Assigned this taxon


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