Electrothrix gahaiensis


Citation

Formal styling
Electrothrix gahaiensis Hu et al., 2025
Effective publication
Hu et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:1v_nrbkf (validated)
Canonical URL
https://seqco.de/i:49758

Nomenclature

Rank
Species
Syllabication
ga.ha.i.en'sis
Etymology
N.L. fem. adj. gahaiensis, of Gahai, name of a salt lake located in Qinghai-Tibet Plateau in China.
Nomenclatural type
NCBI Assembly: GCA_052785085.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are multicellular filaments, up to several centimeters in length. Gram-negative. The species live in hypersaline water sediments with a salinity of 69.1-89.2 g/L and a pH of 7.8-8.1. The genomes of the species have been recovered from salt lakes on the Qinghai-Tibet Plateau in China. GC content of the genomes range between 47.2-47.6%. Genomes encode the enzymes for Long-distance electron transfer from sulfide-oxidizing to oxygen-reducing. Genomes encode the enzymes for CO2 fixation via the Wood-Ljungdahl pathway. Genomes encode [NiFe] hydrogenases of Groups 3c, 3d and 4a, which are involved in the consumption or production of hydrogen. Genomes encode monovalent cation/proton antiporter system Mrp, cation:H+ antiporter YrbG, potassium/proton antiporter CPA2 and potassium uptake protein Trk, which is involved in the “salt-in” strategy to maintain the osmotic balance of cells. Genomes also encode glycine betaine/proline transport system (ProVWX) and choline/glycine/proline betaine transport protein (BetT) for glycine betaine derived directly from the environment, as well as glycine/sarcosine N-methyltransferase (GSMT) and sarcosine/dimethylglycine N-methyltransferase (SDMT) for glycine betaine synthesis, which is involved in the “compatible solute” strategy to maintain the osmotic balance of cells. Nomenclatural type, NCBI Assembly: JALAAI000000000 (MAG XCD06.Bin23) is a metagenome-assembled genome derived from a salt lake sediment sample (Biosample: SAMN25126231). The assembly is of high quality with a completeness of 98.8% and 0.89% contamination and contains 43 tRNA.
Classification
Bacteria » Desulfobacterota » Desulfobulbia » Desulfobales » Desulfobulbaceae » Electrothrix » Electrothrix gahaiensis
Parent
Electrothrix

Genomics

Accession
NCBI Assembly:GCA_052785085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 3.8%
  • Quality: 81.0
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 47.21%
  • Coding Density: 85.36%
  • Codon Table: 11
  • N50: 25,766 bp
  • Contigs: 228
  • Largest Contig: 79,437 bp
  • Assembly Length: 3,956,601 bp
  • Ambiguous Assembly Fraction: 0.01%
Automated checks
Complete

Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
11 months ago by Hu, Wenzhe
Submitted
11 months ago by Hu, Wenzhe
Curators
Endorsed
10 months ago by Palmer, Marike
Validated
2 months ago by St. John, Emily
Date of priority
2025-11-14 06:09 AM (UTC)

Publications
1

Citation Title
Hu et al., 2025, Limnology and Oceanography Insights on adaptive strategies and evolution of cable bacteria in saline lakes
Effective publication



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