Electrothrix gahaiensis


Citation

Formal styling
Electrothrix gahaiensis Hu et al., 2025
Effective publication
Hu et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:1v_nrbkf (validated)
Canonical URL
https://seqco.de/i:49758

Nomenclature

Rank
Species
Syllabication
ga.ha.i.en'sis
Etymology
N.L. fem. adj. gahaiensis, of Gahai, name of a salt lake located in Qinghai-Tibet Plateau in China.
Nomenclatural type
NCBI Assembly: GCA_052785085.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are multicellular filaments, up to several centimeters in length. Gram-negative. The species live in hypersaline water sediments with a salinity of 69.1-89.2 g/L and a pH of 7.8-8.1. The genomes of the species have been recovered from salt lakes on the Qinghai-Tibet Plateau in China. GC content of the genomes range between 47.2-47.6%. Genomes encode the enzymes for Long-distance electron transfer from sulfide-oxidizing to oxygen-reducing. Genomes encode the enzymes for CO2 fixation via the Wood-Ljungdahl pathway. Genomes encode [NiFe] hydrogenases of Groups 3c, 3d and 4a, which are involved in the consumption or production of hydrogen. Genomes encode monovalent cation/proton antiporter system Mrp, cation:H+ antiporter YrbG, potassium/proton antiporter CPA2 and potassium uptake protein Trk, which is involved in the “salt-in” strategy to maintain the osmotic balance of cells. Genomes also encode glycine betaine/proline transport system (ProVWX) and choline/glycine/proline betaine transport protein (BetT) for glycine betaine derived directly from the environment, as well as glycine/sarcosine N-methyltransferase (GSMT) and sarcosine/dimethylglycine N-methyltransferase (SDMT) for glycine betaine synthesis, which is involved in the “compatible solute” strategy to maintain the osmotic balance of cells. Nomenclatural type, NCBI Assembly: JALAAI000000000 (MAG XCD06.Bin23) is a metagenome-assembled genome derived from a salt lake sediment sample (Biosample: SAMN25126231). The assembly is of high quality with a completeness of 98.8% and 0.89% contamination and contains 43 tRNA.
Classification
Bacteria » Desulfobacterota » Desulfobulbia » Desulfobales » Desulfobulbaceae » Electrothrix » Electrothrix gahaiensis
Parent
Electrothrix

Genomics

Accession
NCBI Assembly:GCA_052785085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 3.8%
  • Quality: 81.0
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 47.21%
  • Coding Density: 85.36%
  • Codon Table: 11
  • N50: 25,766 bp
  • Contigs: 228
  • Largest Contig: 79,437 bp
  • Assembly Length: 3,956,601 bp
  • Ambiguous Assembly Fraction: 0.01%
Automated checks
Complete

Last modified 21 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago by Hu, Wenzhe
Submitted
9 months ago by Hu, Wenzhe
Curators
Endorsed
8 months ago by Palmer, Marike
Validated
17 days ago by St. John, Emily
Date of priority
2025-11-14 06:09 AM (UTC)

Publications
1

Citation Title
Hu et al., 2025, Limnology and Oceanography Insights on adaptive strategies and evolution of cable bacteria in saline lakes
Effective publication



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