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Shennongiarchaeum shenzhenensisTs

Citation

Formal styling
Shennongiarchaeum shenzhenensisTs Qi et al., 2025
Effective publication
Qi et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:jopuv68b (validated)
Canonical URL
https://seqco.de/i:49836

Nomenclature

Rank
Species
Syllabication
shen.zhen'ensis
Etymology
N.L. neut. adj. shenzhenensis, of Shenzhen, denoting origin from Shenzhen city
Nomenclatural type
INSDC Nucleotide: JBLIRK000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species established on the basis of AAI, ANI, dDDH and phylogenomic analyses, and is classified as a member of the Shennongarchaeum genus.
Classification
Archaea » “Poseidoniota” » Shennongiarchaeia » Shennongiarchaeales » Shennongiarchaeaceae » Shennongiarchaeum » Shennongiarchaeum shenzhenensisTs
Parent
Shennongiarchaeum

Genomics

Accession
INSDC Nucleotide:JBLIRK000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.2%
  • Contamination: 0.0%
  • Quality: 91.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 72.0%)
  • 1 23S rRNA (up to 52.0%)
  • tRNAs for 19 amino acids
Sequencing depth
5.0 ×
Source
Other features
  • G+C Content: 52.43%
  • Coding Density: 93.13%
  • Codon Table: 11
  • N50: 52,861 bp
  • Contigs: 80
  • Largest Contig: 181,178 bp
  • Assembly Length: 2,853,321 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The quality assessment of the MAG, including completeness, contamination, and heterogeneity, was performed using CheckM v1.0.12. Additionally, rRNA genes (5S, 16S, and 23S) were predicted using RNAmmer v1.2.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago and claimed 9 months ago by Qi, Yanling
Submitted
About 2 months ago by Qi, Yanling
Curators
Endorsed
8 months ago by Rodriguez-R, Luis M
Validated
About 19 hours ago by Rodriguez-R, Luis M
Date of priority
2025-10-19 12:37 PM (UTC)

Publications
1

Citation Title
Qi et al., 2025, Environmental Science & Technology Temporal and Spatial Dynamics of Microbial Community Composition and Functional Potential in Mangrove Wetlands over a Seven-Year Period
Effective publication


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