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Syntrophacetatiphaga salishiaeTs

Citation

Formal styling
Syntrophacetatiphaga salishiaeTs Friedline et al., 2025
Effective publication
Friedline et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:nx_72bs4 (validated)
Canonical URL
https://seqco.de/i:49846

Nomenclature

Rank
Species
Syllabication
sa.lish'i.ae
Etymology
L. gen. n. salishiae, of Salish, pertaining to the Coast Salish people and their lands, and referring to the sampling location for this organism
Nomenclatural type
NCBI Assembly: GCA_050950445.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A syntrophic acetate oxidizing bacterium that is commonly found in anoxic engineered environments like landfills and anaerobic digesters. 
Classification
Bacteria » Bacillota » Clostridia » Peptostreptococcales » Natronincolaceae » Syntrophacetatiphaga » Syntrophacetatiphaga salishiaeTs
Parent
Syntrophacetatiphaga
Pseudonyms
  • JAAZJW01 sp012519835 (Alphanumeric placeholder accession)

Genomics

Accession
NCBI Assembly:GCA_050950445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.0%
  • Contamination: 1.0%
  • Quality: 94.0
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
103.0 ×
Source
Other features
  • G+C Content: 38.4%
  • Coding Density: 84.36%
  • Codon Table: 11
  • N50: 2,281,111 bp
  • Contigs: 1
  • Largest Contig: 2,281,111 bp
  • Assembly Length: 2,281,111 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This genome was assembled from PacBio HiFi data with metaFlye v. 2.9.2, and is a singular closed circular genome. Quality statistics were obtained with CheckM2. 
Automated checks
Complete
See additional details
Last modified 5 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago by Ziels, Ryan
Submitted
6 months ago by Ziels, Ryan
Curators
Endorsed
5 months ago by Rodriguez-R, Luis M
Validated
About 1 month ago by St. John, Emily
Date of priority
2025-10-28 07:17 PM (UTC)

Publications
1

Citation Title
Friedline et al., 2025, Nature Microbiology Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism
Effective publication


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seqco.de/r:nx_72bs4