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Actinosomnolentus pattersoniaeTs

Citation

Formal styling
Actinosomnolentus pattersoniaeTs Tan et al., 2026
Effective publication
Tan et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:_7w3mg8c (validated)
Canonical URL
https://seqco.de/i:51182

Nomenclature

Rank
Species
Syllabication
pat.ter.so'ni.ae
Etymology
N.L. gen. n. pattersoniae, in honour to Diana Patterson, first woman to lead an Australian Antarctic research station.
Nomenclatural type
NCBI Assembly: GCA_965609595.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material is the metagenome assembled genome BH-20_ACT24 recovered from soil from Bunger Hills, East Antarctica. The MAG consists of 2.5 Mbp in 107 contigs with an estimated completeness of 93.99% and 0.16% contamination, 16S (1532 bp), 23S (4576 bp), and 5S (117 bp) genes, and 47 tRNAs (21 unique: 19 standard plus tRNA-fMet and tRNA-SeC). The GC content of this MAG is 68.3%. Predicted to consume H2 at atmospheric levels (high affinity [NiFe]-hydrogenase type 1m). Genome also harbours catechol 2,3-dioxygenase [EC:1.13.11.2]. This species is equivalent to the placeholder species s__JACDCJ01 sp013817655 under the GTDB R220.
Classification
Bacteria » Actinomycetota » Aridivitia » Actinosomnolentales » Actinosomnolentaceae » Actinosomnolentus » Actinosomnolentus pattersoniaeTs
Parent
Actinosomnolentus
Pseudonyms
  • s__JACDCJ01 sp013817655 (Alphanumeric placeholder accession)

Genomics

Accession
NCBI Assembly:GCA_965609595.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.99%
  • Contamination: 0.16%
  • Quality: 93.19
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
34.06 ×
Source
Other features
  • G+C Content: 68.32%
  • Coding Density: 91.85%
  • Codon Table: 11
  • N50: 40,957 bp
  • Contigs: 107
  • Largest Contig: 238,359 bp
  • Assembly Length: 2,490,795 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness estimates calculated with CheckM2 (v1.0.1). rRNA genes obtained with barrnap (v0.9) and Infernal (v1.1.4) with Rfam (v14.10). tRNAs detected with tRNAscan-SE (v2.0.12).
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 10 months ago by Vázquez-Campos, Xabier
Submitted
10 months ago by Vázquez-Campos, Xabier
Curators
Endorsed
7 months ago by Palmer, Marike
Validated
3 days ago by Palmer, Marike
Date of priority
2026-02-23 11:19 PM (UTC)

Publications
1

Citation Title
Tan et al., 2026, Communications Earth & Environment Persistent petroleum pollution shifts soil microbial responses in Bunger Hills, East Antarctica
Effective publication


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seqco.de/r:_7w3mg8c