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Actinopolaris aerotrophaTs

Citation

Formal styling
Actinopolaris aerotrophaTs Tan et al., 2026
Effective publication
Tan et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:_7w3mg8c (validated)
Canonical URL
https://seqco.de/i:51186

Nomenclature

Rank
Species
Syllabication
ae.ro.tro'pha
Etymology
Gr. gen. n. aeros, air, gas; Gr. fem. adj. trophos, feeder; N.L. fem. adj. aerotropha, air-eater
Nomenclatural type
NCBI Assembly: GCA_965611235.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material is the metagenome assembled genome BH-24_ACT26 recovered from soil from Bunger Hills, East Antarctica. The MAG consists of 2.4 Mbp in 93 contigs with an estimated completeness of 98.12% and 0.45% contamination, 16S (1903 bp), 23S (1773 bp), and 5S (117 bp) genes, and 40 tRNAs (20 unique: 19 standard plus tRNA-SeC). The GC content of this MAG is 67.4%. Predicted to be able to reduce nitrate via NO-forming nitrite reductase and oxidise trace gases, i.e., CO and H2, using the aerobic CO dehydrogenase and high affinity [NiFe]-hydrogenase type 1m.
Classification
Bacteria » Actinomycetota » Aridivitia » Actinopolaridales » Actinopolaridaceae » Actinopolaris » Actinopolaris aerotrophaTs
Parent
Actinopolaris

Genomics

Accession
NCBI Assembly:GCA_965611235.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.12%
  • Contamination: 0.45%
  • Quality: 95.87
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 50.0%)
  • 2 23S rRNAs (up to 29.0%)
  • tRNAs for 20 amino acids
Sequencing depth
129.5 ×
Source
Other features
  • G+C Content: 67.49%
  • Coding Density: 90.65%
  • Codon Table: 11
  • N50: 40,346 bp
  • Contigs: 93
  • Largest Contig: 105,443 bp
  • Assembly Length: 2,417,503 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness estimates calculated with CheckM2 (v1.0.1). rRNA genes obtained with barrnap (v0.9) and Infernal (v1.1.4) with Rfam (v14.10). tRNAs detected with tRNAscan-SE (v2.0.12).
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 10 months ago by Vázquez-Campos, Xabier
Submitted
10 months ago by Vázquez-Campos, Xabier
Curators
Endorsed
7 months ago by Palmer, Marike
Validated
5 days ago by Palmer, Marike
Date of priority
2026-02-23 11:19 PM (UTC)

Publications
1

Citation Title
Tan et al., 2026, Communications Earth & Environment Persistent petroleum pollution shifts soil microbial responses in Bunger Hills, East Antarctica
Effective publication


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