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Psychroobscuribacter pollutisoliTs

Citation

Formal styling
Psychroobscuribacter pollutisoliTs Tan et al., 2026
Effective publication
Tan et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:_7w3mg8c (validated)
Canonical URL
https://seqco.de/i:51201

Nomenclature

Rank
Species
Syllabication
pol.lu.ti.so'li
Etymology
L. masc. perf. part. pollutus, polluted; L. neut. n. solum, soil; N.L. gen. n. pollutisoli, of polluted soil
Nomenclatural type
NCBI Assembly: GCA_965610205.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material is the metagenome assembled genome BH-10_CYA1 recovered from soil from Bunger Hills, East Antarctica. The MAG consists of 7.5 Mbp in 91 contigs with an estimated completeness of 100% and 4.31% contamination, 16S (1508 bp), 23S (2963 bp), and 5S (116 bp) genes, and 66 tRNAs (22 unique: 20 standard plus tRNA-fMet and tRNA-SeC). The GC content of this MAG is 49%. Predicted to be involved in nitrogen cycling (nitrate reductase, NarG; and nitric oxide reductase, NorB). The genome also harbours a sensory rhodopsin but no photosynthetic machinery.
Classification
Bacteria » Cyanobacteriota » Vampirovibrionophyceae » Obscuribacterales » Obscuribacteraceae » Psychroobscuribacter » Psychroobscuribacter pollutisoliTs
Parent
Psychroobscuribacter

Genomics

Accession
NCBI Assembly:GCA_965610205.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 4.31%
  • Quality: 78.45
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
41.08 ×
Source
Other features
  • G+C Content: 48.96%
  • Coding Density: 88.26%
  • Codon Table: 11
  • N50: 139,455 bp
  • Contigs: 91
  • Largest Contig: 401,831 bp
  • Assembly Length: 7,484,994 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness estimates calculated with CheckM2 (v1.0.1). rRNA genes obtained with barrnap (v0.9) and Infernal (v1.1.4) with Rfam (v14.10). tRNAs detected with tRNAscan-SE (v2.0.12).
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 10 months ago by Vázquez-Campos, Xabier
Submitted
10 months ago by Vázquez-Campos, Xabier
Curators
Endorsed
7 months ago by Palmer, Marike
Validated
4 days ago by Palmer, Marike
Date of priority
2026-02-23 11:19 PM (UTC)

Publications
1

Citation Title
Tan et al., 2026, Communications Earth & Environment Persistent petroleum pollution shifts soil microbial responses in Bunger Hills, East Antarctica
Effective publication


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