Nocardioides humicus

Citation

Formal styling

Nocardioides humicus Sereika et al., 2025

Effective publication

Sereika et al., 2025

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:5pc-9lmc (validated)

Canonical URL

https://seqco.de/i:51613

Nomenclature

Rank

Species

Syllabication

hu'mi.cus

Etymology

N.L. masc. adj. humicus, Pertinent to soil, referring to a species found in soil

Nomenclatural type

Genome sc|0004297 ^Ts

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Species established on the basis of ANI comparisons to GTDB R226

Classification

Bacteria » Actinomycetota » Actinomycetes » Propionibacteriales » Nocardioidaceae » Nocardioides » Nocardioides humicus

Parent

Nocardioides

Genomics

Accession

NCBI Assembly: GCA_963726525.1 [NCBI | EMBL]

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.2%
• Contamination: 1.9%
• Quality: 86.7

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

43.4 ×

Source

• BioSample: SAMEA112270801
• BioSample: SAMEA114812694

Other features

• G+C Content: 72.74%
• Coding Density: 90.76%
• Codon Table: 11
• N50: 790,233 bp
• Contigs: 9
• Largest Contig: 1,331,583 bp
• Assembly Length: 4,199,835 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified 11 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_963726525.1
• Wikispecies: Nocardioides humicus

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered

About 1 year ago and claimed about 1 year ago by Sereika, Mantas

Submitted

12 months ago by Sereika, Mantas

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

3 months ago by Palmer, Marike

Date of priority

2025-10-07 05:27 AM (UTC)