JSONPDF

Lysgaardicola glebicus

Citation

Formal styling
Lysgaardicola glebicus Sereika et al., 2025
Effective publication
Sereika et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:kohim6k6 (validated)
Canonical URL
https://seqco.de/i:52961

Nomenclature

Rank
Species
Syllabication
gle.bi'cus
Etymology
L. fem. n. gleba, clod or lump of earth; L. masc. adj. suff. -icus, suffix used with the sense of belonging to; N.L. masc. adj. glebicus, Pertinent to lumps of earth, referring to a species found in soil
Nomenclatural type
NCBI Assembly: GCA_963701145.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Species established on the basis of ANI comparisons to GTDB R226 and 16S rRNA classifications to Silva 138.2. Formerly "soil metagenome" in Silva 138.2. Based on metabolic reconstruction, Lysgaardicola glebicus is inferred to encode the rod shape-determining protein MreB and peptidoglycan biosynthesis genes.
Classification
Bacteria » Actinomycetota » Thermoleophilia » Solirubrobacterales » Solirubrobacteraceae » Lysgaardicola » Lysgaardicola glebicus
Parent
Lysgaardicola

Genomics

Accession
NCBI Assembly:GCA_963701145.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.7%
  • Contamination: 1.89%
  • Quality: 81.25
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
68.2 ×
Source
Other features
  • G+C Content: 69.21%
  • Coding Density: 88.51%
  • Codon Table: 11
  • N50: 4,696,003 bp
  • Contigs: 1
  • Largest Contig: 4,696,003 bp
  • Assembly Length: 4,696,003 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates are by CheckM2
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago and claimed 9 months ago by Sereika, Mantas
Submitted
9 months ago by Sereika, Mantas
Curators
Validated
3 days ago by Palmer, Marike
Date of priority
2025-10-06 05:40 AM (UTC)

Publications
1

Citation Title
Sereika et al., 2025, Nature Microbiology Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
Effective publication


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:kohim6k6