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Odderium danicum

Citation

Formal styling
Odderium danicum Sereika et al., 2025
Effective publication
Sereika et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:kohim6k6 (validated)
Canonical URL
https://seqco.de/i:54774

Nomenclature

Rank
Species
Syllabication
da'ni.cum
Etymology
L. neut. adj. danicum, Danish, referring to a species found in Denmark
Nomenclatural type
NCBI Assembly: GCA_963839975.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Species established on the basis of ANI comparisons to GTDB R226 and 16S rRNA classifications to Silva 138.2. Formerly "uncultured Acidobacteria bacterium" in Silva 138.2. Based on metabolic reconstruction, Odderium danicum is inferred to encode the rod shape-determining protein MreB, peptidoglycan biosynthesis genes and flagellar genes.
Classification
Bacteria » Acidobacteriota » Terriglobia » Terriglobales » “Sulfuritelmatobacteraceae” » Odderium » Odderium danicum
Parent
Odderium

Genomics

Accession
NCBI Assembly:GCA_963839975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.69%
  • Contamination: 2.16%
  • Quality: 83.89
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
37.5 ×
Source
Other features
  • G+C Content: 58.1%
  • Coding Density: 87.11%
  • Codon Table: 11
  • N50: 1,125,460 bp
  • Contigs: 10
  • Largest Contig: 1,953,506 bp
  • Assembly Length: 4,095,871 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates are by CheckM2
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago and claimed 9 months ago by Sereika, Mantas
Submitted
9 months ago by Sereika, Mantas
Curators
Validated
2 days ago by Palmer, Marike
Date of priority
2025-10-06 05:40 AM (UTC)

Publications
1

Citation Title
Sereika et al., 2025, Nature Microbiology Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
Effective publication


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