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Hepatoplasma crinochetorumTs

Citation

Formal styling
Hepatoplasma crinochetorumTs Wang et al., 2004 (priority 2023)
Effective publication
Wang et al., 2004
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:z6by014f (validated)
Canonical URL
https://seqco.de/i:83

Nomenclature

Rank
Species
Syllabication
cri.no.che.to'rum
Etymology
N.L. gen. pl. n. crinochetorum, of isopods (Crinocheta)
Notes
Hepatopancreatic symbiont
Nomenclatural type
NCBI Assembly: GCA_000582535.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Wang et al., 2004: spherical cells (diameter, 0.5 to 0.8 μm); no cell wall and outer membrane; forms stalk-like cytoplasmic appendages at one or two cell poles that attach to host epithelia or are involved in budding. Basis of assignment: 16S ribosomal DNA sequences (accession numbers AY500249 and AY500250 ), hybridization with 16S rRNA-targeted oligonucleotide probe (5′-GTG AAA AAT TCC CTA CTG CTG-3′). Symbiont of P. scaber and other terrestrial isopods belonging to the taxon Crinocheta, located exclusively in the lumen of the hepatopancreas; so far uncultivated.
Classification
Bacteria » Mycoplasmatota » Mollicutes » Mycoplasmatales » Hepatoplasmataceae » Hepatoplasma » Hepatoplasma crinochetorumTs
Parent
Hepatoplasma gtdb

Genomics

Accession
NCBI Assembly:GCA_000582535.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.17%
  • Contamination: 0.0%
  • Quality: 92.17
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
350.0 ×
Source
Other features
  • G+C Content: 22.53%
  • Coding Density: 92.26%
  • Codon Table: 4
  • N50: 657,101 bp
  • Contigs: 1
  • Largest Contig: 657,101 bp
  • Assembly Length: 657,101 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Chuvochina, Maria
Submitted
Over 2 years ago by Chuvochina, Maria
Curators
Endorsed
Over 2 years ago by Palmer, Marike
Validated
Over 2 years ago by Palmer, Marike
Date of priority
2023-08-22 04:20 AM (UTC)

Publications
5

Citation Title
Kawato et al., 2024, Access Microbiology Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Kawato et al., 2023, Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Collingro et al., 2015, Genome Announcements Draft Genome Sequence of “ Candidatus Hepatoplasma crinochetorum” Ps, a Bacterial Symbiont in the Hepatopancreas of the Terrestrial Isopod Porcellio scaber
Leclercq et al., 2014, Genome Biology and Evolution Phylogenomics of “Candidatus Hepatoplasma crinochetorum,” a Lineage of Mollicutes Associated with Noninsect Arthropods
Wang et al., 2004, Applied and Environmental Microbiology “CandidatusHepatoplasma crinochetorum,” a New, Stalk-Forming Lineage ofMollicutesColonizing the Midgut Glands of a Terrestrial Isopod
Effective publication


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seqco.de/r:z6by014f