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Hepatoplasma crinochetorumTs

Citation

Formal styling
Hepatoplasma crinochetorumTs (ex Wang et al., 2004) Leclercq et al., 2014 (priority 2023)
Effective publication
Leclercq et al., 2014
Original (not valid) publication
Wang et al., 2004
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:z6by014f (validated)
Canonical URL
https://seqco.de/i:83

Nomenclature

Rank
Species
Syllabication
cri.no.che.to'rum
Etymology
N.L. gen. pl. n. crinochetorum, of isopods (Crinocheta)
Notes
The formal citation of this name has been updated from Hepatoplasma crinochetorum Wang et al., 2004 (priority 2023) to Hepatoplasma crinochetorum (ex Wang et al., 2004) Leclercq et al., 2014 (priority 2023), reflecting the fact that the type genome of this species was made available in Leclercq et al., 2014.
Nomenclatural type
NCBI Assembly: GCA_000582535.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Wang et al., 2004: spherical cells (diameter, 0.5 to 0.8 μm); no cell wall and outer membrane; forms stalk-like cytoplasmic appendages at one or two cell poles that attach to host epithelia or are involved in budding. Basis of assignment: 16S ribosomal DNA sequences (accession numbers AY500249 and AY500250 ), hybridization with 16S rRNA-targeted oligonucleotide probe (5′-GTG AAA AAT TCC CTA CTG CTG-3′). Symbiont of P. scaber and other terrestrial isopods belonging to the taxon Crinocheta, located exclusively in the lumen of the hepatopancreas; so far uncultivated.
Classification
Bacteria » Bacillota » Bacilli » Mycoplasmatales » Hepatoplasmataceae » Hepatoplasma » Hepatoplasma crinochetorumTs
Parent
Hepatoplasma gtdb

Genomics

Accession
NCBI Assembly:GCA_000582535.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.17%
  • Contamination: 0.0%
  • Quality: 92.17
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
350.0 ×
Source
Other features
  • G+C Content: 22.53%
  • Coding Density: 92.26%
  • Codon Table: 4
  • N50: 657,101 bp
  • Contigs: 1
  • Largest Contig: 657,101 bp
  • Assembly Length: 657,101 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified over 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 3 years ago by Chuvochina, Maria
Submitted
Almost 3 years ago by Chuvochina, Maria
Curators
Endorsed
Almost 3 years ago by Palmer, Marike
Validated
Almost 3 years ago by Palmer, Marike
Date of priority
2023-08-22 04:20 AM (UTC)

Publications
5

Citation Title
Kawato et al., 2024, Access Microbiology Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Kawato et al., 2023, Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Collingro et al., 2015, Genome Announcements Draft Genome Sequence of “ Candidatus Hepatoplasma crinochetorum” Ps, a Bacterial Symbiont in the Hepatopancreas of the Terrestrial Isopod Porcellio scaber
Leclercq et al., 2014, Genome Biology and Evolution Phylogenomics of “Candidatus Hepatoplasma crinochetorum,” a Lineage of Mollicutes Associated with Noninsect Arthropods
Effective publication
Wang et al., 2004, Applied and Environmental Microbiology “CandidatusHepatoplasma crinochetorum,” a New, Stalk-Forming Lineage ofMollicutesColonizing the Midgut Glands of a Terrestrial Isopod
Original (not valid) publication


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