| Reported in | Status | Registered by | ||
|---|---|---|---|---|
| Flavobacterium humidisoli | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium heparinum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium halmophilum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium halmephilium | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium gondwanense | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium gleum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium ferrugineum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium esteraromaticum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium erciyesense | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium endoglycinae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium devorans | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium davisii | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium dauae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium daemonensis | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium cyclinae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium covae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium coralii | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium cloacae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium channae | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium ceti | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium capsulatum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium breve | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium branchiophila | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium bomensis | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium balustinum | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium aquatilis | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium anatoliense | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium ammoniigenes | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium ammonificans | Unknown | Valid (ICNP) | Excubia bot about 3 years ago | |
| Flavobacterium acidurans | Unknown | Valid (ICNP) | Excubia bot about 3 years ago |